Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002341-TA|BGIBMGA002341-PA|undefined
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.19
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 31 0.19
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 30 0.43
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.43
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.57
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 28 1.3
SPBC216.06c |swi1||replication fork protection complex subunit S... 27 2.3
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 27 2.3
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 27 2.3
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 27 2.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 3.1
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 27 4.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 4.0
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 27 4.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 4.0
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 27 4.0
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 5.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 26 5.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 26 5.3
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 26 7.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 25 9.3
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 25 9.3
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 25 9.3
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 9.3
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 9.3
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c... 25 9.3
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 225 HLAMKIKQLFENLEAIDLNREGMTPRTEQKVLLNEIQKISEIKQKLME 272
+L KI + + +EAI++N EG+ TE K L ++I +I I+ ++ +
Sbjct: 893 NLQNKISNMDKEVEAININNEGLV--TEIKTLQDKIMEIGGIRYRIQK 938
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 31.1 bits (67), Expect = 0.19
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 73 SDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERALK 132
S E A ++ K + R + L + L AD VD+ N K+ I E A K
Sbjct: 166 SSIERSASLREKQAREEAERAATALREAELKHRLAQANAD-VDVANSKLDIALKNEAAWK 224
Query: 133 KHKELMVKRDKILQERKNAELLKKWRQNYRHSKQSAACTYRLDPKSY 179
+E + K + + AEL + RH A TY+ + Y
Sbjct: 225 AERESSLAHQKAVIDSARAEL-----ERARHEAAVADATYKKEHYEY 266
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 29.9 bits (64), Expect = 0.43
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 75 EEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERALKKH 134
++ + +GK PK K +K+ + S K L N Q + K K +
Sbjct: 7 DDAFGVFEGKVPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQEQGTK----KLESSVGE 62
Query: 135 KELMVKRDKILQERKNAELLKKWRQNYRHSKQSAACTYRLDPK 177
+E KR KI + N +L+ N H SA + PK
Sbjct: 63 QESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVADTKHKPK 105
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/85 (21%), Positives = 37/85 (43%)
Query: 87 KLPKSRTKSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERALKKHKELMVKRDKILQ 146
K + R +++ S +A DNV+++ I++ KE+ E + K L
Sbjct: 916 KFMEERQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLA 975
Query: 147 ERKNAELLKKWRQNYRHSKQSAACT 171
K E++ + + ++H +S T
Sbjct: 976 SEKTLEMMNETHEQFKHLVESEIST 1000
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.57
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 41 DSSKPELASF-SSVHGGKLKCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSILSY 99
D + E F +S+ G L + + YD E+ + K + + K +T +
Sbjct: 1141 DGAYDEFCDFQTSLKDGALSKCDQHHPDDKAYDILSEWLPEAKERIRNIKKLKTDMLTKL 1200
Query: 100 TQSAKYLNALRADNVD-IQNEKIK-------IYYL-----KERALKKHKELMVK-RDKIL 145
+ KYL D++D ++N K +Y + +ER K+ + +M + RDK++
Sbjct: 1201 ENTVKYL--CEYDSIDKVRNSFFKNLNSFYEMYSIAKAENEERFEKEKRRIMSEDRDKLI 1258
Query: 146 QERKNAELLKKWR 158
+ R+ ++ K+R
Sbjct: 1259 RGRQKTSIVAKYR 1271
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 94 KSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERALKKHKELMVKRDKILQERKNAE 152
K+I+ QS +L +V+I +K + LKE L+K E + ILQ +K E
Sbjct: 104 KAIIKDEQSQSKTKSLDEADVEILVQKYREQLLKELQLQKSTEKGKNFESILQPQKRKE 162
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 27.5 bits (58), Expect = 2.3
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 160 NYRHSKQSAACTYRLDPKSYPYDTNPDHMTFLTREDIEKDLPDKYXXXXXXXXXXTVPRK 219
NYR+ + + AC L P ++P +T +H TF D+ +L + + +
Sbjct: 82 NYRNWRIALACVELLVPLTWPLET--EHETFRENVDVLYNL--RQAQSNYKNSILSYKKG 137
Query: 220 TNNDVHLAMKIKQLFENLEAIDLNREGMTPRTEQKVLLNEIQKISEIKQK 269
+ LA+ +K L E+ L +G+ +L I +I E+K K
Sbjct: 138 SVLSAILAVLLKPLSTPAESRTLRDKGIIRIV--LLLFRNILQIDELKTK 185
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 29 DDAIGTYEENHKDSSKPELASFSSVHGGKLKCLSVQFSEK-ELYDSDEEYYAKIKGKCP 86
D GT+ + + F + G+ L+ Q+ E E+ D D+E +K CP
Sbjct: 80 DPVSGTFGQGMSRNEMSIKEFFQKLKNGERLYLTTQYDESNEVLDGDDEVSLLVKSLCP 138
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 17 ENIFARSQSVGSDDAIGTYEENHKDSSKPELAS 49
+N F +S G +D G + EN DSS P++++
Sbjct: 4 KNFFDEGKSYGVNDYAGFHFENGADSSLPQVSA 36
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 144 ILQERKNAELLKKWRQNYRHSKQSAACTYRLDPKSYP--YDTNPDHMTFLT 192
I Q++KN ++ +W + + S + Y P S P YD+ + ++LT
Sbjct: 67 ITQKKKNQKIASRWYGSLQSSFRQQFAQYGPGPNSSPIIYDSPTEFSSYLT 117
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.3
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 37 ENHKDSSKPELASFSSVHGGKLKCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSI 96
EN K+ + SF + G +C + D + +Y C +L
Sbjct: 420 ENLKEYIRNNSLSFQATAGELTQCKQLPQPRITGNDQENSHYTGAGNNCLELVGKENNCK 479
Query: 97 LSYTQ-------SAKYLN--ALRADNVDIQNEKIK--IYYLKERALKKHKELMVKRDKIL 145
Y Q S ++N L + ++ +N+ I+ + LKE+ L K+L + +
Sbjct: 480 NQYPQYFSNIDESNAFINNQCLELEALNRKNDLIRGELDSLKEKNLVAQKQLKSANNTLH 539
Query: 146 QERKNAELLKKWRQNYRHSKQSAACTYRL 174
K+ ++L+ Q+ + + ++ +RL
Sbjct: 540 VRAKHIQILENTNQSLKKNLENGRAEFRL 568
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 101 QSAKYLNALRADNVDIQNEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQN 160
+ AK L + +N Q ++K KE+ K K+L + +++ Q R+ L ++ Q
Sbjct: 568 RQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQK 627
Query: 161 YRHSKQ 166
+K+
Sbjct: 628 ALEAKR 633
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 127 KERALKKHKELMVKRDKILQERKNAELLKKWRQNYRHSKQSA 168
+ER LKK +E KRDK Q + E ++ R+ R ++Q+A
Sbjct: 584 QERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAA 625
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 9 TYLHEKYIENIFARSQSVGSDDAIGTYEENHKDSSKPELASFS 51
T +H Y+E++ + + GS+ T + + S+KP LAS S
Sbjct: 201 TSMHLDYLESVMNMAIA-GSEHIYNTMQSAVRQSAKPALASLS 242
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 116 IQNEKIKIY-YLKERALKKHKELMVKRDKILQE 147
+ E++++ ++KER KKH++L ++ D I+++
Sbjct: 20 LDEERLEVLRWMKEREEKKHRQLALQYDPIVRD 52
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 4.0
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 129 RALKKHKELMVKRDKILQERKNAELLKKWRQNYRHSKQSAACTYRLD--PKSYPYDTNPD 186
RA+++ ++ + KR++ LQE K E + R+ +K+ K Y YD +
Sbjct: 4 RAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDYKYDESR- 62
Query: 187 HMTFLTREDIEKDLPDKY 204
T+E+ E +L D+Y
Sbjct: 63 ----ATQEETETNLDDEY 76
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 142 DKILQERKNAELLKKWRQNYRHSKQSA 168
D+++QE K +K+ QNY ++KQ A
Sbjct: 337 DEMVQEEKLLNKQRKYGQNYEYAKQIA 363
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 88 LPKSRTKSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERALKKHKELMVKRDKI 144
+P++ K + Y S K L+ L + ++ NEK++ Y + +E +K D+I
Sbjct: 305 VPRTTAKHNIPYYMSQKDLDKLSSRDIRRLNEKVEHTYTQNVHNACLREQQIKEDEI 361
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.3
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 59 KCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDIQN 118
KC S+++ EE Y K + K L K ++S + L R D++
Sbjct: 493 KCKKQAKSQQKSLPYLEEQYEKYRAKAADLEKEFSESTTLLKRDLSSLTTSRVDDL---- 548
Query: 119 EKIKIYYLKERALKKHKELMVKRDKILQE 147
K + E A++ KE++ + + L +
Sbjct: 549 -KASVETWLESAIESQKEIIERWESFLDQ 576
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/50 (20%), Positives = 30/50 (60%)
Query: 223 DVHLAMKIKQLFENLEAIDLNREGMTPRTEQKVLLNEIQKISEIKQKLME 272
D H++ ++ ++E + + + ++ + ++Q L E++KIS + K+++
Sbjct: 401 DRHVSEYVRTIYELRQKVSILQKRIAEESKQLALNKEVRKISSREIKMLD 450
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 149 KNAELLKKWRQNYRHSKQSAACTYRLDPKSYPYD 182
KN +LL++ N RH +RLDPKS YD
Sbjct: 156 KNKKLLREHMNNKRH--------FRLDPKSSEYD 181
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 84 KCPKLPKSRTKSILSYTQSAKYLNALRADNVDIQNEKIKIYYLKERA-LKKH 134
KC +P+S SI+ +A + L + D+ + KI+ +ER L++H
Sbjct: 51 KCSTIPESPKDSIVEPKPTATPVAQLHSKVYDLYRDSPKIWLRRERQWLQRH 102
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 230 IKQLFENLEAIDLNREGMTPRTEQKVLLNEIQKISEIKQKLMELSTTNTQ 279
IK + ++ + + + R + K +L I+K S IK+KL ++ Q
Sbjct: 75 IKLYYNFMDGFNKRTDTLQHRVDDKKILKTIEKWSCIKEKLRRVANITEQ 124
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 9.3
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 101 QSAKYLNALRADNVDIQNEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQN 160
+ AK ++ L + + Q EK KI + A+ + ++ +KR + Q+ + +L K R
Sbjct: 25 EKAKEIHTLSEE--EFQVEKAKIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLE 82
Query: 161 YRHSKQ 166
+SKQ
Sbjct: 83 ILNSKQ 88
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 124 YYLKERALKKHKELMVKRDKILQERKNAE 152
Y LKER + H+EL K+ + Q++ N E
Sbjct: 96 YSLKERVERYHQELEAKKLRRKQKKVNKE 124
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 118 NEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQN-YRHSK 165
N++I L L + + V ++ +E++N +LKKW N RH K
Sbjct: 4 NDQISNLCLGALQLLADQPISVISNEPSEEQRNEHVLKKWENNVLRHWK 52
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 39 HKDSSKPELASFSSVHGGKLKCLSVQFSEKELYDSDEE 76
H + P SS + C Q SEKELY D +
Sbjct: 161 HSLNLAPSDKEISSTEESEQLCYKEQESEKELYSKDND 198
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 9.3
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 86 PKLPKSRTKSILSYTQSAKYLNALRADNVD---IQNEKIKIYYLKERALKKHKELMVKRD 142
PK+ K+RT L + A+ L +D VD + K Y K+ ++ K + +
Sbjct: 375 PKISKARTDDALQALEVARVHEKLLSDKVDFVTLNLVKESKTYTKKTSVSLQKAIREYVE 434
Query: 143 K-ILQERKNAELLKKWRQNYRHSKQSAACTYRLDPKSYP 180
K ER+ +++ R + R+ + RL + YP
Sbjct: 435 KEAYYERRLLSIMESIRPHIRNIDPFGGLS-RLGREEYP 472
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.3
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 5 RKIITYLHEKYIENIFARSQSVGSDDAIGTYEENHKDSSKPELASFSSVHGGKLKCL-SV 63
R+ + L KY E + GSD++ EE+ S EL + V L+ + +
Sbjct: 75 REELQKLEAKYGEQMANGVDGEGSDESSSEEEED----SDGELVT-PEVDAAILRMIVKI 129
Query: 64 QFSEKELYDSDEEYYAKIK 82
+ + +LYDS ++Y+ +++
Sbjct: 130 RNKDPDLYDSQQKYFDEVE 148
>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 127 KERALKKHKELMVKRDKILQERKNAELLKKWRQNYRHSKQSAAC 170
K+R +K KE +V+++K+L K+ L KK NYR ++ C
Sbjct: 92 KKRKKEKKKETIVEKNKVL---KSFALYKK-INNYRSTRCVLVC 131
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.129 0.355
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,886
Number of Sequences: 5004
Number of extensions: 54951
Number of successful extensions: 192
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 35
length of query: 284
length of database: 2,362,478
effective HSP length: 72
effective length of query: 212
effective length of database: 2,002,190
effective search space: 424464280
effective search space used: 424464280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -