GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002341-TA|BGIBMGA002341-PA|undefined
         (284 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.76 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   4.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 20/108 (18%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 57  KLKCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDI 116
           ++K +  + ++ E +D+      K  G   K   + + S+ S T   ++ ++  +     
Sbjct: 178 EIKNVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSC 237

Query: 117 QNEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQNYRHS 164
             ++ + Y  K+R   ++++L  +++K+L+ER + E   + R+  + S
Sbjct: 238 SRDRNREYRKKDR---RYEKLHNEKEKLLEERTSRERYSRSREREQKS 282


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 72  DSDEEY-YAKIKGKCPKLPKSRTKSILSY 99
           D+ EEY Y ++KG+   +P+S   + L Y
Sbjct: 286 DASEEYSYLRLKGQMLYIPESDLVTFLCY 314


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 19/108 (17%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 57  KLKCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDI 116
           ++K +  + ++ E +D+      K  G   K   + + S+ S T   ++ ++  +     
Sbjct: 167 EIKNVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSC 226

Query: 117 QNEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQNYRHS 164
             ++ + Y  K+R   ++++L  +++K+L+ER + +   + R+  ++S
Sbjct: 227 SRDRNREYKEKDR---RYEKLHNEKEKLLEERTSRKRYSRSREREQNS 271


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 19/108 (17%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 57  KLKCLSVQFSEKELYDSDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNALRADNVDI 116
           ++K +  + ++ E +D+      K  G   K   + + S+ S T   ++ ++  +     
Sbjct: 178 EIKNVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSC 237

Query: 117 QNEKIKIYYLKERALKKHKELMVKRDKILQERKNAELLKKWRQNYRHS 164
             ++ + Y  K+R   ++++L  +++K+L+ER + +   + R+  ++S
Sbjct: 238 SRDRNREYKEKDR---RYEKLHNEKEKLLEERTSRKRYSRSREREQNS 282


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 72  DSDEEY-YAKIKGKCPKLPKSRTKSILSY 99
           D+ EEY Y ++KG+   +P+S   + L Y
Sbjct: 286 DASEEYSYLRLKGQMLYIPESDLVTFLCY 314


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 150 NAELLKKWRQNYRHSKQSAACTYRLDPK 177
           NAE +KK+ + Y++S    + T+   PK
Sbjct: 59  NAEGMKKYCETYKNSIYDVSMTFGPVPK 86


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/33 (24%), Positives = 23/33 (69%)

Query: 132 KKHKELMVKRDKILQERKNAELLKKWRQNYRHS 164
           +++++L  +++K+L+ER N +   + R+  ++S
Sbjct: 16  RRYEKLHNEKEKLLEERTNRKRNSRSREREQNS 48


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/33 (24%), Positives = 23/33 (69%)

Query: 132 KKHKELMVKRDKILQERKNAELLKKWRQNYRHS 164
           +++++L  +++K+L+ER N +   + R+  ++S
Sbjct: 16  RRYEKLHNEKEKLLEERTNRKRNSRSREREQNS 48


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 67  EKELYDSDEEYYAKIKGKCPKLPKSRTKSILSYTQSAKYLNAL 109
           E++   S  E +A ++   P LP  +   I +   + +Y++ L
Sbjct: 262 ERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFL 304


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 135 KELMVKRDKILQERKNAELLKKWR 158
           KE+ +  D++  E  NA++   W+
Sbjct: 497 KEIKIITDQLKSEELNAKVTNDWK 520


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease
          precursor protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 49 SFSSVHGGKLKCLSVQFSEKE 69
          + +S H   LKC  V+FSE +
Sbjct: 73 TITSYHRINLKCSLVEFSENK 93


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,550
Number of Sequences: 429
Number of extensions: 3791
Number of successful extensions: 26
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 284
length of database: 140,377
effective HSP length: 57
effective length of query: 227
effective length of database: 115,924
effective search space: 26314748
effective search space used: 26314748
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)