GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.2  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    28   2.0  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   3.6  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   4.7  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    27   4.7  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    26   8.2  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 2   TEIDPFTNEPDAVT-EIAKHIEDIEKLSKA---AAKANDGVQI-PIQD--TNIIYEGIIQ 54
           TEIDP +   D+       H   I  +  +    +  ND +Q+ P  D  T+    G  +
Sbjct: 597 TEIDPSSPRDDSTPLSWRSHSHPIPPVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSR 656

Query: 55  VIQTIIESFKDKIYAKEFLKSRGIERVIVPNLMMPH 90
            I  +I S KD I+     K R  +  +  N  +PH
Sbjct: 657 SIDEVILSIKDVIFDNNLYKQRSYQSGVAANAHLPH 692


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 22  EDIEKLSKAAAKANDGVQIPIQDTNIIYEGIIQVIQTIIESFKDKIYAKEFLKSRGIERV 81
           E+IE   K+AA+ + G +I  +D     + I+ +   ++E    +    E+L++R   + 
Sbjct: 229 EEIEATLKSAAEISMGTEITEED----LDNIVMLADQVLELASYRAQLSEYLRNR--MQA 282

Query: 82  IVPNL 86
           I PNL
Sbjct: 283 IAPNL 287


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 82  IVPNLMMPHLELKTSILVLVKILFEVTPTATKAAVPIALVD 122
           ++ ++   +LELK    + +KI   V PT  K AV + L D
Sbjct: 55  VISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILND 95


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 8   TNEPDAVTEIAKHIEDIEKLSKAAAKANDGVQIPIQDTNIIYEGIIQVIQTIIESFKDKI 67
           T++P  +    + +++IE++  +     D   +P+Q   +   GI++   + +E  K K 
Sbjct: 201 TSDPGFIDRTMEQLKEIEEMKDSNGMFCDADHVPLQGQELC-NGILEECFSFLEDAKTKE 259

Query: 68  YAKEFLKS 75
              + +KS
Sbjct: 260 GLSDEMKS 267


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 36  DGVQIPIQDTNIIYEGIIQVIQTIIESFKDKIYA 69
           D V  P  D + ++E I Q+IQ+ I+ +   I+A
Sbjct: 540 DRVFAPESDNSSVFEEISQLIQSAIDGYNVSIFA 573


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 122 DRLLDIFENDGNLALKAHSVDILVLWLPKNPLLQARVMKLKGLEPFYNQITKLNGSIVKT 181
           D +L++    GNL ++       V+ +  +P + A + K     P   ++  + G ++KT
Sbjct: 52  DTVLEVGPGTGNLTVRMLEKARKVIAVEMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKT 111

Query: 182 LLELFNV 188
            L  F+V
Sbjct: 112 DLPYFDV 118


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 271 KTKAIEIYDLLFKFVTDPGNEDLFLKSDINVT 302
           K  A + + L   FV D G ED+F K+ I ++
Sbjct: 445 KAAAYKNHHLASTFVQDVGKEDVFEKTSITIS 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.140    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,693
Number of Sequences: 5004
Number of extensions: 49334
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 7
length of query: 321
length of database: 2,362,478
effective HSP length: 73
effective length of query: 248
effective length of database: 1,997,186
effective search space: 495302128
effective search space used: 495302128
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)