GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0573 + 23985468-23987054                                         31   1.6  
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305...    30   2.2  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    29   6.6  
06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915           28   8.7  

>02_04_0573 + 23985468-23987054
          Length = 528

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 146 LWLPKNPLL---QARVMKLKGLEPFYNQITKLNGSIVKTLLELFNVI 189
           LWL KN L+   +  V KL+ LE  Y Q     GSI  ++ +L N+I
Sbjct: 396 LWLSKNNLIGTIEEWVGKLRNLELLYLQENNFTGSIPSSIGDLTNLI 442


>04_04_0124 +
           22929700-22929761,22930192-22930310,22930459-22930541,
           22930640-22930738,22930769-22930786,22931044-22931110,
           22931244-22931319,22931450-22931516,22932303-22932520,
           22933124-22933191,22933743-22933822,22934362-22934448,
           22934524-22934631,22934753-22934848,22935045-22935140,
           22936826-22937155
          Length = 557

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 187 NVILKEHIRARDGKIQKGKNDKSRLYQRIGLIERMS 222
           N++L + I A DGK  KGK+D SR+    G+ +++S
Sbjct: 370 NIVLGDVIVAVDGKPIKGKSDLSRVLDDYGVGDKVS 405


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 80   RVIVPNLMMPHLELKTSILVLVKILFEVTPTATKAAVPIALVDRLLDIFENDGNLALKAH 139
            R +V    MP   L++S   L  IL  +  T +     +  + RLL++  N  N+ L A 
Sbjct: 1309 RQVVQQQRMPKDLLQSS---LRPILVNLAHTRSLTMPLLQGLARLLELLSNWFNVTLGAK 1365

Query: 140  SVDILVLWLPKNPLLQARVMKLKGLEP 166
             +D L  WL    L Q++     G EP
Sbjct: 1366 LLDHLKKWLEPEKLAQSQKSWKAGDEP 1392


>06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915
          Length = 387

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 51  GIIQVIQTIIESFKDKIYAKEFLKSRGIERVIVPNLMMPHLELKTSILVLVKILFEVTPT 110
           G++  +  + +S++  I  ++FL+     R   P L    +E  ++ILV       + P+
Sbjct: 36  GVLVRLSVVCKSWRRLITDRDFLRGYRAIRQAPPILGFFCVEFGSAILVPTTAFSSIIPS 95

Query: 111 ATKAAVPIALVDRLLDIFENDGNL 134
               + P+   DRLLD+ E   N+
Sbjct: 96  LL-VSDPMTGADRLLDLPERWRNI 118


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.140    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,690,626
Number of Sequences: 37544
Number of extensions: 268926
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 4
length of query: 321
length of database: 14,793,348
effective HSP length: 82
effective length of query: 239
effective length of database: 11,714,740
effective search space: 2799822860
effective search space used: 2799822860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)