GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (321 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.41 
SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)                  29   5.1  
SB_49947| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)           28   8.9  

>SB_4907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 55  VIQTIIESFKDKIYAKEFLKSRGIERVIVPNLMMPHLELKTSILVLVKILF--EVTPTAT 112
           ++ T + S K     ++  KS+  ++ I        +  K S L + +  +  EV     
Sbjct: 326 ILTTHLASKKHGNGKEKLKKSKLKDQTITEAFRAADMTQKDSTLPMSERAYRLEVGEEFL 385

Query: 113 KAAVPIALVDRLLDIFENDG-NLALKAH-SVDILVLWLPKNPLLQARVMKL 161
           KA +P+  +D+L  + E DG  L   AH ++ +++ +L +N  +  R++K+
Sbjct: 386 KAGIPLGKIDKLRSLLEKDGQRLTASAHLAIAVILRFLDENWSIIQRLVKI 436


>SB_53811| Best HMM Match : Mab-21 (HMM E-Value=0.003)
          Length = 700

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/52 (23%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 22  EDIEKLSKAAAKANDGVQIPIQDTNIIYEGIIQVIQTIIESFKDKIYAKEFL 73
           +D+ K++ +  K   GV++ ++D +I Y  ++ V+ T++   ++K+++   L
Sbjct: 491 QDVIKINVSQLKQYSGVRLRVRDISIGYTLLVNVVPTLVA--EEKVFSTSHL 540


>SB_49947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 10 EPDAVTEIAKHIEDIEKLSKAAAKANDGVQIPIQDTNIIYEGI 52
          EP+  T I ++  +++K+S++  K N+G+  P +  +++ EGI
Sbjct: 48 EPEVSTIIERYQNELQKISESIRKRNEGLTWPYR--SLLPEGI 88


>SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)
          Length = 271

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 73  LKSRGIERVIVPNLMMPHLELKTSILVLVKILFEVTPTAT-KAAV-PIALVDRLLDIFEN 130
           ++ + +ER I+PN      +++  I+ L K      P AT KA V PI L      +F  
Sbjct: 192 IQVKSVERYIIPNAQKATKKIRDRIMKLFK---GAVPWATPKAPVHPIHLRVSAAQVFLM 248

Query: 131 DGNLALKAHSVDILVLWLPKNP 152
                 +    D L+LW P  P
Sbjct: 249 KEGKEGRERFCDTLLLWTPMIP 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.140    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,914,053
Number of Sequences: 59808
Number of extensions: 308663
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 4
length of query: 321
length of database: 16,821,457
effective HSP length: 82
effective length of query: 239
effective length of database: 11,917,201
effective search space: 2848211039
effective search space used: 2848211039
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)