GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (321 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    26   1.6  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    26   1.6  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   6.6  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 40  IPIQDTNIIYEGIIQVIQTIIESFKDKIYAKEFL 73
           +P   T  +  G   + +T++++ KD++YAKE L
Sbjct: 433 VPDLTTAELQVGRFGIRETLLDNVKDEVYAKENL 466


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 40  IPIQDTNIIYEGIIQVIQTIIESFKDKIYAKEFL 73
           +P   T  +  G   + +T++++ KD++YAKE L
Sbjct: 433 VPDLTTAELQVGRFGIRETLLDNVKDEVYAKENL 466


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 12   DAVTEIAKHIEDIEKLSKAAAKANDGVQIPIQDTNIIYEGIIQVIQ 57
            +A+   A  +ED  +L K A    D  ++  +D   +  G+I  ++
Sbjct: 1217 EAIDASAPEVEDEVELDKEAPNVRDAAEVDEEDGLKMENGVIAEVE 1262


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 7   FTNEPDAVTEIAKHIEDIEKLSKAAAKANDGV 38
           FT  PD +  +  H+E++    +   +AN+ V
Sbjct: 805 FTELPDTIELVDAHLEELRVRFECLPQANESV 836


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.140    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,398
Number of Sequences: 2123
Number of extensions: 9094
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 321
length of database: 516,269
effective HSP length: 64
effective length of query: 257
effective length of database: 380,397
effective search space: 97762029
effective search space used: 97762029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)