GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (321 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p pro...    33   0.40 
AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA...    33   0.40 

>BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p
           protein.
          Length = 972

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 17  IAKHIEDIEKLSKAAAKANDGVQIPIQDTNIIYEGII----QVIQTIIESFKDKIYAKEF 72
           +A H+ DI K       A +    PIQ   I   G +    Q IQ + ES   +   K  
Sbjct: 462 LAPHVHDIIKSDAKKPLAEENFSYPIQSAIIASNGQLTEGFQYIQELRESQSHRSRHKME 521

Query: 73  LKSRGIERVIVPNLMM---PHLE-LKTSILVLVKILFEVTPTATKAAVPIALVDRL-LDI 127
             S   ++V+V    M   P +E L     V + +  +V   A + A   A VD + LD+
Sbjct: 522 GSSESDKKVLVLGAGMVSAPLVEWLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDV 581

Query: 128 FENDGNLALKAHSVDILVLWLP 149
            E+ G+L       D++V  LP
Sbjct: 582 NESTGHLQELCGRADVVVSLLP 603


>AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA
           protein.
          Length = 928

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 17  IAKHIEDIEKLSKAAAKANDGVQIPIQDTNIIYEGII----QVIQTIIESFKDKIYAKEF 72
           +A H+ DI K       A +    PIQ   I   G +    Q IQ + ES   +   K  
Sbjct: 418 LAPHVHDIIKSDAKKPLAEENFSYPIQSAIIASNGQLTEGFQYIQELRESQSHRSRHKME 477

Query: 73  LKSRGIERVIVPNLMM---PHLE-LKTSILVLVKILFEVTPTATKAAVPIALVDRL-LDI 127
             S   ++V+V    M   P +E L     V + +  +V   A + A   A VD + LD+
Sbjct: 478 GSSESDKKVLVLGAGMVSAPLVEWLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDV 537

Query: 128 FENDGNLALKAHSVDILVLWLP 149
            E+ G+L       D++V  LP
Sbjct: 538 NESTGHLQELCGRADVVVSLLP 559


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.140    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,307
Number of Sequences: 52641
Number of extensions: 467203
Number of successful extensions: 1090
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 2
length of query: 321
length of database: 24,830,863
effective HSP length: 85
effective length of query: 236
effective length of database: 20,356,378
effective search space: 4804105208
effective search space used: 4804105208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)