Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002339-TA|BGIBMGA002339-PA|IPR000886|Endoplasmic
reticulum targeting sequence
(321 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 29 3.3
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 29 3.3
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 29 4.4
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.4
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 29 4.4
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 4.4
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec... 29 4.4
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph... 29 4.4
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 143 ILVLWLPKNPLLQARVMKLKGLEPFYNQITKLNGSI 178
+L+LWLP N L + LKG PF ++ N +I
Sbjct: 326 LLLLWLPNNCLTEVSQQTLKG-APFLRMVSLSNNNI 360
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 143 ILVLWLPKNPLLQARVMKLKGLEPFYNQITKLNGSI 178
+L+LWLP N L + LKG PF ++ N +I
Sbjct: 326 LLLLWLPNNCLTEVSQQTLKG-APFLRMVSLSNNNI 360
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 399 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 458
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 459 LDEIDAAENIELVRRRST 476
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 394 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 453
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 454 LDEIDAAENIELVRRRST 471
>U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical
protein K07E3.2 protein.
Length = 771
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 136 LKAHSV-DILVLWLPKNPLLQARVMKLKG---LEPFYNQITKLNGSIVKTLLELFNVILK 191
+ A++V + LV P L+QAR+++LK ++ Y QI +++G + + ILK
Sbjct: 45 MSANAVREFLVTTCPSPSLMQARILQLKSSQKIDGGYFQILQIHGYVKFNEPSMVKSILK 104
Query: 192 EHI 194
E I
Sbjct: 105 ESI 107
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 399 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 458
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 459 LDEIDAAENIELVRRRST 476
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 394 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 453
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 454 LDEIDAAENIELVRRRST 471
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 399 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 458
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 459 LDEIDAAENIELVRRRST 476
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 149 PKNPLLQARVMKLKGLEPFYNQITKLNGSIVKTLLELFNV-ILKEHIRARDGKIQ--KGK 205
P+ P V + K E + T+LNG++VK ++ + L+E+IR + + K +
Sbjct: 394 PEEPTQVILVSEAKNGEVLTKKSTELNGTVVKEIMLSSRLEALEEYIRKMVNRCETIKWE 453
Query: 206 NDKSRLYQRIGLIERMST 223
D+ + I L+ R ST
Sbjct: 454 LDEIDAAENIELVRRRST 471
>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
receptor TOL-1 protein.
Length = 1221
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 106 EVTPTATKAAVPIALVDRLLDIFENDGNLALKAHSVDILVLWLPKNPLLQARVMKLKGLE 165
EV P +K + L + L++ E LK S+D+ L + P +V +LK ++
Sbjct: 372 EVLPENSKIG-NLRLSNNSLELLEPSSLSGLKLESLDLSHNKLTEVPAAIGKVEQLKKVD 430
Query: 166 PFYNQITKLNGSIVKTLLELFNVILKEH 193
+N+I K+ ++ + +L V L +
Sbjct: 431 LSHNRIAKVYQYVLNKIKQLHTVDLSNN 458
>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
(drosophila) family protein 1 protein.
Length = 1221
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 106 EVTPTATKAAVPIALVDRLLDIFENDGNLALKAHSVDILVLWLPKNPLLQARVMKLKGLE 165
EV P +K + L + L++ E LK S+D+ L + P +V +LK ++
Sbjct: 372 EVLPENSKIG-NLRLSNNSLELLEPSSLSGLKLESLDLSHNKLTEVPAAIGKVEQLKKVD 430
Query: 166 PFYNQITKLNGSIVKTLLELFNVILKEH 193
+N+I K+ ++ + +L V L +
Sbjct: 431 LSHNRIAKVYQYVLNKIKQLHTVDLSNN 458
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.140 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,782,747
Number of Sequences: 27539
Number of extensions: 248501
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 11
length of query: 321
length of database: 12,573,161
effective HSP length: 81
effective length of query: 240
effective length of database: 10,342,502
effective search space: 2482200480
effective search space used: 2482200480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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