GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
         (94 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   0.71 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   0.71 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   3.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    19   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   8.7  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    19   8.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    19   8.7  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 19  SAVPVAVGGSPTSANG---SDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRGK 75
           S+ P A   S  +  G   S VFL      S+ S+ + + TG    D     + K N+ K
Sbjct: 126 SSPPDARAASDAARRGVLYSSVFLGSPGDASNASIGSGEGTGEEDDDT----NGKKNQKK 181

Query: 76  PRIFGK 81
             IF K
Sbjct: 182 RGIFPK 187


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 19  SAVPVAVGGSPTSANG---SDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRGK 75
           S+ P A   S  +  G   S VFL      S+ S+ + + TG    D     + K N+ K
Sbjct: 282 SSPPDARAASDAARRGVLYSSVFLGSPGDASNASIGSGEGTGEEDDDT----NGKKNQKK 337

Query: 76  PRIFGK 81
             IF K
Sbjct: 338 RGIFPK 343


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 41 DDSSMSDGSLYANQNTGAFTSDARVVR 67
          DD  +S   + AN+ +GA   DAR  R
Sbjct: 74 DDPVLSQ--IIANKQSGAAAPDARTQR 98


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
          protein protein.
          Length = 585

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 6  GVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFL 39
          G SGI CQ  D        + G  T  +G + ++
Sbjct: 14 GFSGINCQTNDEDCTETSCMNGG-TCIDGINSYI 46


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 74  GKPRIFGKDVECNPLMTL 91
           G+P  F  + E NP+ T+
Sbjct: 342 GRPATFTCNFEGNPIKTI 359


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory
          receptor candidate 39 protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 23 VAVGGSPTSAN 33
          V V  SPTSAN
Sbjct: 23 VKVAASPTSAN 33


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory
          receptor candidate 10 protein.
          Length = 437

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 23 VAVGGSPTSAN 33
          V V  SPTSAN
Sbjct: 23 VKVAASPTSAN 33


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,110
Number of Sequences: 317
Number of extensions: 794
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 114,650
effective HSP length: 48
effective length of query: 46
effective length of database: 99,434
effective search space:  4573964
effective search space used:  4573964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.7 bits)
S2: 37 (19.0 bits)