Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
(94 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0145 + 8881484-8882377 28 0.91
04_03_0273 - 13742351-13743357,13743617-13743731 27 2.1
02_02_0318 - 8913463-8913765,8913860-8913946 27 2.1
09_02_0066 + 3801810-3802412,3802602-3802745,3803027-3803152,380... 26 3.7
08_02_1524 + 27657711-27657768,27658612-27658671,27658805-276588... 26 4.8
03_02_1007 + 13160772-13161311 26 4.8
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 25 6.4
01_07_0336 - 42833205-42834926 25 6.4
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 25 6.4
10_08_0248 + 16161518-16163437 25 8.5
07_03_0526 - 19046900-19047083,19049061-19049464 25 8.5
01_01_0125 - 1154626-1154685,1155100-1155195,1155578-1155652,115... 25 8.5
>05_03_0145 + 8881484-8882377
Length = 297
Score = 28.3 bits (60), Expect = 0.91
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 28 SPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG-KPRIFGKDVECN 86
SPTS N D ++ + +GSL +TG +T+ V+ S S G KP + D+ +
Sbjct: 25 SPTSQNTGDTVIFWGRNKDEGSLREACDTGLYTT---VIISFLSAFGYKPGYYKVDISGH 81
Query: 87 PL 88
P+
Sbjct: 82 PV 83
>04_03_0273 - 13742351-13743357,13743617-13743731
Length = 373
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 45 MSDGSLYANQNTGAFTSDARVVRSNKSNRGKPRIFGKDVECNPL 88
+SD L AN + A+ S + VR + G PR+ G + CN +
Sbjct: 51 ISDEWLRANPSVTAYMSTSLNVRQQVAEEGIPRL-GAEAACNAI 93
>02_02_0318 - 8913463-8913765,8913860-8913946
Length = 129
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 33 NGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRGKPRIF 79
+G + Y +SMS+ SL N N G +++ S++S R + F
Sbjct: 73 HGGQLRNYSSTSMSNESLVPNHNIGLLGRIQQLIDSHQSRRCRTAAF 119
>09_02_0066 +
3801810-3802412,3802602-3802745,3803027-3803152,
3803709-3803796,3804005-3804098,3804670-3804763,
3805133-3805187,3805675-3805766,3805896-3806066,
3806217-3806273,3806531-3806615,3806946-3807007,
3807259-3807333,3807452-3807556,3807924-3808065,
3808312-3808385
Length = 688
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 5 DGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDAR 64
D V+G ++ S+ V A+ GSP +A + + S++ SL N A +
Sbjct: 77 DTVNGSPSGAVNGSTKV--AINGSPNAAVNGSMKAVTNGSVNGTSLVKGSNMSALVKTQK 134
Query: 65 VVRSN 69
+R N
Sbjct: 135 RMRPN 139
>08_02_1524 +
27657711-27657768,27658612-27658671,27658805-27658890,
27659343-27659963,27660460-27660618
Length = 327
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 26 GGSPTSANGSDVFLYDDSSMSDGSLYAN-----QNTGAFTSDARVVRSNKSNRGKP 76
GG A G ++ + SS+ D ++YA+ + +S R +NK+NR P
Sbjct: 7 GGEDAGAAGREIGGFSPSSIVDYTVYAHALVPKDDKCCLSSKQRSCSTNKNNRAAP 62
>03_02_1007 + 13160772-13161311
Length = 179
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 5 DGVSGIRCQVIDNSSAVPVAVGG------SPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
+GV+ RC D ++A A GG S +S G +DD S + A
Sbjct: 45 EGVAESRCPTTDAAAAAAAANGGVIELSSSDSSGGGGGAGRWDDDDDGCSSCVDGDDGAA 104
Query: 59 FTSDARVVRSNKSNRGKPRIFG 80
R ++ +G+ + FG
Sbjct: 105 AGGGGAGRRRDEEEKGRSQQFG 126
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 3 DMDGVSGIRC--QVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFT 60
+ D + G +V+DNS++ ++G P SD Y + DG+ ++ + A
Sbjct: 288 EQDSIHGAHLLRKVVDNSTSFSTSLGDHPDCGIDSDSHGYVQNHDKDGTKSRSRCSTAKK 347
Query: 61 SDARVVRSNKSNRGK 75
A + N G+
Sbjct: 348 LFADTIVKESENNGR 362
>01_07_0336 - 42833205-42834926
Length = 573
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 24 AVGGSPTSANGSDVFLYDDSSMSDGS 49
A GG+PTSA V +D S SD S
Sbjct: 132 AKGGTPTSAAADAVRALEDGSDSDAS 157
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 46 SDGSLYANQNTGAFTSDA 63
S G+L A QNTGAF S A
Sbjct: 377 SRGNLSAEQNTGAFESPA 394
>10_08_0248 + 16161518-16163437
Length = 639
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 TSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDA 63
TSA + FL DDS + G +A GA +SDA
Sbjct: 75 TSATSNSTFLADDSVLRTGEDFA-AAIGANSSDA 107
>07_03_0526 - 19046900-19047083,19049061-19049464
Length = 195
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 18 SSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
SS PVA GG S++ + V SS S S+ A GA
Sbjct: 32 SSLAPVAGGGGGGSSSSAAVAAGASSSSSSSSVAAAARRGA 72
>01_01_0125 -
1154626-1154685,1155100-1155195,1155578-1155652,
1155729-1155831,1155986-1156078,1156774-1156886,
1156981-1157124,1157247-1157357
Length = 264
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 9 GIRCQVIDNSSAVPVAVGGSPT-----SANGSDVFLYDDSSMSDGSLY 51
G R ++D++ P GG P SA G F+ DD M DG ++
Sbjct: 41 GRRAVLVDSTVFYPQG-GGQPADTGVISAGGGTRFIVDDVRMKDGVVF 87
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,258
Number of Sequences: 37544
Number of extensions: 109603
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 12
length of query: 94
length of database: 14,793,348
effective HSP length: 70
effective length of query: 24
effective length of database: 12,165,268
effective search space: 291966432
effective search space used: 291966432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
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