GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
         (94 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08698-1|CAA69957.1|  562|Homo sapiens ranbp3 protein.                 27   7.2  
Y08697-1|CAA69956.1|  496|Homo sapiens ranbp3-a protein.               27   7.2  
DQ234346-1|ABB29975.1|  494|Homo sapiens RAN binding protein 3 t...    27   7.2  
AK025300-1|BAB15106.1|  567|Homo sapiens protein ( Homo sapiens ...    27   7.2  
AC004602-2|AAC14485.1|  444|Homo sapiens F23487_2 protein.             27   7.2  
AK222990-1|BAD96710.1|  562|Homo sapiens RAN binding protein 3 i...    27   9.5  
AF121397-1|AAD29347.1|   98|Homo sapiens immunoglobulin lambda l...    27   9.5  

>Y08698-1|CAA69957.1|  562|Homo sapiens ranbp3 protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 460 IDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 519

Query: 75  KP 76
            P
Sbjct: 520 AP 521


>Y08697-1|CAA69956.1|  496|Homo sapiens ranbp3-a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 394 IDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 453

Query: 75  KP 76
            P
Sbjct: 454 AP 455


>DQ234346-1|ABB29975.1|  494|Homo sapiens RAN binding protein 3
           transcript variant a protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 392 IDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 451

Query: 75  KP 76
            P
Sbjct: 452 AP 453


>AK025300-1|BAB15106.1|  567|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21647 fis, clone COL08457. ).
          Length = 567

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 465 IDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 524

Query: 75  KP 76
            P
Sbjct: 525 AP 526


>AC004602-2|AAC14485.1|  444|Homo sapiens F23487_2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 342 IDKASEKSIRITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 401

Query: 75  KP 76
            P
Sbjct: 402 AP 403


>AK222990-1|BAD96710.1|  562|Homo sapiens RAN binding protein 3
           isoform RANBP3-a variant protein.
          Length = 562

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/62 (27%), Positives = 25/62 (40%)

Query: 15  IDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRG 74
           ID +S   + +    T   G  VFL   SS   G LYA  +       +RV +  ++   
Sbjct: 460 IDKASEKSIHITAMDTEDQGVKVFLISASSKDTGQLYAALHHRILALRSRVEQEQEAKMP 519

Query: 75  KP 76
            P
Sbjct: 520 AP 521


>AF121397-1|AAD29347.1|   98|Homo sapiens immunoglobulin lambda
          light chain variable region protein.
          Length = 98

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 12 CQVIDNSSAVPVAVGGSPTSANG 34
          CQV D+SS  P   GG+PT+  G
Sbjct: 75 CQVWDSSSDHPWVFGGAPTNPMG 97


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,380,331
Number of Sequences: 224733
Number of extensions: 505258
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 73,234,838
effective HSP length: 71
effective length of query: 23
effective length of database: 57,278,795
effective search space: 1317412285
effective search space used: 1317412285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)