GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
         (94 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2029|AAF58154.1| 1015|Drosophila melanogaster CG16827-P...    31   0.27 
AE014298-2857|AAF48964.1| 2037|Drosophila melanogaster CG14200-P...    30   0.47 
U36791-1|AAC46927.1|  601|Drosophila melanogaster DHR78 protein.       29   1.1  
AY071266-1|AAL48888.1|  160|Drosophila melanogaster RE30049p pro...    27   4.4  
AE014298-2727|AAF48849.2|  160|Drosophila melanogaster CG15044-P...    27   4.4  
X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein pr...    26   5.8  
AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-P...    26   5.8  
AY928072-1|AAX78396.1| 1319|Drosophila melanogaster hyperpolariz...    26   7.7  
AY928069-1|AAX78393.1| 1282|Drosophila melanogaster hyperpolariz...    26   7.7  
AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB...    26   7.7  
AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE...    26   7.7  

>AE013599-2029|AAF58154.1| 1015|Drosophila melanogaster CG16827-PA
           protein.
          Length = 1015

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 43  SSMSDGSLYANQNTGAFTSDARVVRSNKSNRGK 75
           +S  DG++Y   N G+FT + R++RS   + G+
Sbjct: 301 NSYDDGAIYVFINKGSFTFEERIIRSPAGSGGR 333


>AE014298-2857|AAF48964.1| 2037|Drosophila melanogaster CG14200-PA
           protein.
          Length = 2037

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 22  PVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNRGKPRIFGK 81
           P+ +  S  S+NGS VF+ D+        Y+  N     SD +   S+K     P  F  
Sbjct: 649 PILIQDSDASSNGSVVFVEDEPRQRGRGAYSQSNGNVNVSD-KAASSSKMASNIPSCFDF 707

Query: 82  DVE 84
           + E
Sbjct: 708 EEE 710


>U36791-1|AAC46927.1|  601|Drosophila melanogaster DHR78 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 5   DGVSGIRCQVIDNSSAVPVAVGGSPTS--ANGSDVFLYDDSSMSDG 48
           D V   R  ++D    +  A GGS TS   NGS  +L   S    G
Sbjct: 120 DSVQHERKPIVDRKEGIIAAAGGSSTSGGGNGSSTYLSGKSGYQQG 165


>AY071266-1|AAL48888.1|  160|Drosophila melanogaster RE30049p
          protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 21 VPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
          +  +V G P  A  SD++  D + ++D + Y   N  A  ++   V+ +K N
Sbjct: 15 IMASVSGQP-HARASDLYYTDITPVTDETRYTTLNPDAQLNEMNKVKHSKGN 65


>AE014298-2727|AAF48849.2|  160|Drosophila melanogaster CG15044-PA
          protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 21 VPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
          +  +V G P  A  SD++  D + ++D + Y   N  A  ++   V+ +K N
Sbjct: 15 IMASVSGQP-HARASDLYYTDITPVTDETRYTTLNPDAQLNEMNKVKHSKGN 65


>X07985-1|CAA30794.1| 2175|Drosophila melanogaster cut protein
           protein.
          Length = 2175

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 53  NQNTGAFTSDARVVRSNKSNRGKPRIF--GKDVECNPLMTLLK 93
           N N+ +  S+ R  ++N +N G+P +    KD E   L+  L+
Sbjct: 408 NNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQ 450


>AE014298-1048|AAF46264.2| 2175|Drosophila melanogaster CG11387-PA,
           isoform A protein.
          Length = 2175

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 53  NQNTGAFTSDARVVRSNKSNRGKPRIF--GKDVECNPLMTLLK 93
           N N+ +  S+ R  ++N +N G+P +    KD E   L+  L+
Sbjct: 408 NNNSSSGNSEKRKKKNNNNNNGQPAVLLAAKDKEIKALLDELQ 450


>AY928072-1|AAX78396.1| 1319|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B2C2 protein.
          Length = 1319

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 5   DGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
           D  SG+R  ++D+S + PV+ G    S+ G    LYD       SL A    GA
Sbjct: 125 DSRSGLR--ILDSSHS-PVSCGTQSVSSTGGQSALYDACHEYSRSLSAAAAEGA 175


>AY928069-1|AAX78393.1| 1282|Drosophila melanogaster
           hyperpolarization-activated ionchannel variant
           DMIH-A1B1C1 protein.
          Length = 1282

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 5   DGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
           D  SG+R  ++D+S + PV+ G    S+ G    LYD       SL A    GA
Sbjct: 125 DSRSGLR--ILDSSHS-PVSCGTQSVSSTGGQSALYDACHEYSRSLSAAAAEGA 175


>AE013599-1867|ABC66058.1| 1290|Drosophila melanogaster CG8585-PB,
           isoform B protein.
          Length = 1290

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 5   DGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
           D  SG+R  ++D+S + PV+ G    S+ G    LYD       SL A    GA
Sbjct: 125 DSRSGLR--ILDSSHS-PVSCGTQSVSSTGGQSALYDACHEYSRSLSAAAAEGA 175


>AE013599-1866|ABC66057.1| 1327|Drosophila melanogaster CG8585-PE,
           isoform E protein.
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 5   DGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVFLYDDSSMSDGSLYANQNTGA 58
           D  SG+R  ++D+S + PV+ G    S+ G    LYD       SL A    GA
Sbjct: 125 DSRSGLR--ILDSSHS-PVSCGTQSVSSTGGQSALYDACHEYSRSLSAAAAEGA 175


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,844,579
Number of Sequences: 52641
Number of extensions: 184011
Number of successful extensions: 437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 11
length of query: 94
length of database: 24,830,863
effective HSP length: 72
effective length of query: 22
effective length of database: 21,040,711
effective search space: 462895642
effective search space used: 462895642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)