Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
(94 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 32 0.067
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 32 0.067
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 32 0.067
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 27 2.5
AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical... 25 7.7
AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical... 25 7.7
AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H... 25 7.7
AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H... 25 7.7
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 31.9 bits (69), Expect = 0.067
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 44 SMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
+MSDGSL + +TG+F T D +V+ K + GKP
Sbjct: 5844 TMSDGSLLSTDSTGSFVTEDGKVI--EKDDEGKP 5875
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 16 DNSSAVPVAVGGS-PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNR 73
D S V GS PT G+ ++ + DG+L A +TG+F T D +++ K +
Sbjct: 4155 DESGKTVYPVRGSHPTDDTGNVIY---PITKPDGTLLATDSTGSFVTEDGQII--EKDDE 4209
Query: 74 GKP 76
GKP
Sbjct: 4210 GKP 4212
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 7362 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 7405
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 8136 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 8179
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 9899 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 9942
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 41 DDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
D + DG +N +TGAF T D V+ +N+ GKP
Sbjct: 8753 DTVTTPDGIPLSNDSTGAFITEDGTVIENNED--GKP 8787
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DGSL + +++G+F +D V S K + GKP
Sbjct: 11986 DGSLLSTESSGSFVTDDGTVVS-KDSDGKP 12014
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 7716 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 7744
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 8490 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 8518
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 10253 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 10281
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 31.9 bits (69), Expect = 0.067
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 44 SMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
+MSDGSL + +TG+F T D +V+ K + GKP
Sbjct: 5889 TMSDGSLLSTDSTGSFVTEDGKVI--EKDDEGKP 5920
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 16 DNSSAVPVAVGGS-PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNR 73
D S V GS PT G+ ++ + DG+L A +TG+F T D +++ K +
Sbjct: 4200 DESGKTVYPVRGSHPTDDTGNVIY---PITKPDGTLLATDSTGSFVTEDGQII--EKDDE 4254
Query: 74 GKP 76
GKP
Sbjct: 4255 GKP 4257
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 7407 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 7450
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 8181 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 8224
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 9944 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 9987
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 41 DDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
D + DG +N +TGAF T D V+ +N+ GKP
Sbjct: 8798 DTVTTPDGIPLSNDSTGAFITEDGTVIENNED--GKP 8832
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DGSL + +++G+F +D V S K + GKP
Sbjct: 12031 DGSLLSTESSGSFVTDDGTVVS-KDSDGKP 12059
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 7761 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 7789
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 8535 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 8563
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 10298 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 10326
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 31.9 bits (69), Expect = 0.067
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 44 SMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
+MSDGSL + +TG+F T D +V+ K + GKP
Sbjct: 5889 TMSDGSLLSTDSTGSFVTEDGKVI--EKDDEGKP 5920
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 16 DNSSAVPVAVGGS-PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNR 73
D S V GS PT G+ ++ + DG+L A +TG+F T D +++ K +
Sbjct: 4200 DESGKTVYPVRGSHPTDDTGNVIY---PITKPDGTLLATDSTGSFVTEDGQII--EKDDE 4254
Query: 74 GKP 76
GKP
Sbjct: 4255 GKP 4257
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 7407 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 7450
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 8181 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 8224
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 29 PTSANGSDVFLYDDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
PT +G+ ++ + DG+ A +TGAF T D +V+ K + GKP
Sbjct: 9944 PTDESGNTIY---PITKPDGTPLATDSTGAFVTDDGQVI--EKDDEGKP 9987
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 41 DDSSMSDGSLYANQNTGAF-TSDARVVRSNKSNRGKP 76
D + DG +N +TGAF T D V+ +N+ GKP
Sbjct: 8798 DTVTTPDGIPLSNDSTGAFITEDGTVIENNED--GKP 8832
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DGSL + +++G+F +D V S K + GKP
Sbjct: 12031 DGSLLSTESSGSFVTDDGTVVS-KDSDGKP 12059
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 7761 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 7789
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 8535 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 8563
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 47 DGSLYANQNTGAFTSDARVVRSNKSNRGKP 76
DG+L A +TG+F +D + K + GKP
Sbjct: 10298 DGTLLATDSTGSFVADDGQI-IEKDDEGKP 10326
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1 MFDMDGVSGIRCQVIDNSSAVPVAVGGSPTSANGSDVF-LYDDSSMSDGSLYANQNTGAF 59
M DMD + + + + P+ GS ++ G+D+F +D+S + N N
Sbjct: 852 MADMDYNTPFTAEPVQDEEEEPITESGSDATS-GADIFDEQEDASSGASGSFDNNNAQVL 910
Query: 60 TS 61
TS
Sbjct: 911 TS 912
>AL034393-22|CAD36499.1| 655|Caenorhabditis elegans Hypothetical
protein Y18D10A.6b protein.
Length = 655
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 37 VFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
+F DS SD S A+ +GA S+ VV NK++
Sbjct: 17 IFQTVDSDSSDSSASASVVSGAVKSEDTVVAVNKTD 52
>AL034393-21|CAA22320.2| 681|Caenorhabditis elegans Hypothetical
protein Y18D10A.6a protein.
Length = 681
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 37 VFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
+F DS SD S A+ +GA S+ VV NK++
Sbjct: 43 IFQTVDSDSSDSSASASVVSGAVKSEDTVVAVNKTD 78
>AF497833-1|AAM18111.1| 655|Caenorhabditis elegans putative Na-H
exchanger isoform 8b protein.
Length = 655
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 37 VFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
+F DS SD S A+ +GA S+ VV NK++
Sbjct: 17 IFQTVDSDSSDSSASASVVSGAVKSEDTVVAVNKTD 52
>AF497832-1|AAM18110.1| 681|Caenorhabditis elegans putative Na-H
exchanger isoform 8a protein.
Length = 681
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 37 VFLYDDSSMSDGSLYANQNTGAFTSDARVVRSNKSN 72
+F DS SD S A+ +GA S+ VV NK++
Sbjct: 43 IFQTVDSDSSDSSASASVVSGAVKSEDTVVAVNKTD 78
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,172
Number of Sequences: 27539
Number of extensions: 91034
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 41
length of query: 94
length of database: 12,573,161
effective HSP length: 69
effective length of query: 25
effective length of database: 10,672,970
effective search space: 266824250
effective search space used: 266824250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -