GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002338-TA|BGIBMGA002338-PA|undefined
         (94 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   2.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   5.9  

>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 40  YDDSSMSDGSLYANQNTGAFTSDARVVRSNKSNR 73
           Y+DS   DG+ Y N    + + D       K  R
Sbjct: 234 YEDSRHEDGNSYRNDGERSCSRDRSREYKKKDRR 267


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 7   VSGIRCQVIDNSSAVPVAVGGSPTSA 32
           V GIR   + ++S  P  + G+P ++
Sbjct: 567 VHGIRGLRVADASVQPQVISGNPVAS 592


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,977
Number of Sequences: 429
Number of extensions: 812
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 94
length of database: 140,377
effective HSP length: 49
effective length of query: 45
effective length of database: 119,356
effective search space:  5371020
effective search space used:  5371020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)