GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002337-TA|BGIBMGA002337-PA|IPR000941|Enolase
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   386   e-108
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   365   e-102
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    29   1.7  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   3.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   5.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    27   5.1  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  386 bits (951), Expect = e-108
 Identities = 188/427 (44%), Positives = 278/427 (65%), Gaps = 1/427 (0%)

Query: 1   MPIKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGM 60
           M I+ + ARQI+DS G PTVEVD+ TE G+ R  VPS  S  I EA ++RD +  ++ G 
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 61  GVSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXX 120
           GV  A+ N+N IIAP ++K NL+VT QK  D+FL+ LDGTEN+S+LGANAIL VS+    
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 121 XXXXXXXXPLYRHISDMAGVT-TIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFA 179
                   PL+++I++  G     +LPVP F +L GG  +   L FQE++I+PTGA SF+
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180

Query: 180 DAMRIGSEIYRYVKNAIANKFSVDCTYVSDSGGFSVPLQSHRDALMFLTDAIKQCGYVGK 239
           +AMR G+E Y  +K+    ++      V D GG +  LQ+ ++AL  + +AI + GY GK
Sbjct: 181 EAMRWGAETYHTLKSIAKKRYGSSAGNVGDEGGIAPDLQTPQEALDLIVEAINKAGYEGK 240

Query: 240 AEIAINAAASDMFKDGAYDLEFKNPNSNPQEYMSSDKLAEIYLDNIKEFPVCSIEDGFQF 299
            +I ++ A+S+ + DG YDL+ K     P+  ++  +L ++Y++  K++P+ SIED F  
Sbjct: 241 IKIGLDVASSEFYVDGKYDLDIKAAKPKPENKLTYQQLTDLYVELSKKYPIVSIEDPFDQ 300

Query: 300 DDWSAWSTLTSRTQAQIFGNDLTQTNLRRVGLATEKKAGNAIGLRLNQAGTFTEVIEAFK 359
           DDWSAW+ + + T  QI G+DLT TN++R+  A +KK  NA+ L++NQ G+ TE + A +
Sbjct: 301 DDWSAWTHMKAETDFQIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAVR 360

Query: 360 LLKSNGFASVVVDRWGDTEDVFLADLAVGLSTGQMKCGAPVRSERVGKYNQIIRIEEELG 419
           +    G+  +V  R G+T D F++ L VG+  GQ+K GAP RSER+ KYN+++RIEEELG
Sbjct: 361 MSYEAGWGVMVSHRSGETADTFISHLTVGIGAGQLKSGAPCRSERLAKYNELLRIEEELG 420

Query: 420 ALSKYAG 426
           +   YAG
Sbjct: 421 SEGVYAG 427


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  365 bits (899), Expect = e-102
 Identities = 180/425 (42%), Positives = 272/425 (64%), Gaps = 1/425 (0%)

Query: 3   IKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGMGV 62
           I+ + +R I+DS G PTVEV++ TELG FR  VPS  S    EA +LRDN+  ++ G GV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 63  SSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXXXX 122
           + A+ N+N II P L+K ++++T Q+ ID+F+I LDGT ++S+LGAN+I+ VS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 123 XXXXXXPLYRHISDMAGV-TTIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADA 181
                 PLY +I  +AG  TT  +PVP F +L GG  +   L FQE++IMP  A +F++ 
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183

Query: 182 MRIGSEIYRYVKNAIANKFSVDCTYVSDSGGFSVPLQSHRDALMFLTDAIKQCGYVGKAE 241
           +R GSE+Y  +K     K+      V D GG +  L +  +AL  + +AIK+ GY GK +
Sbjct: 184 LRWGSEVYHTLKALAKKKYGASAGNVGDEGGIAPDLTTAEEALDLVNEAIKEAGYDGKVK 243

Query: 242 IAINAAASDMFKDGAYDLEFKNPNSNPQEYMSSDKLAEIYLDNIKEFPVCSIEDGFQFDD 301
           I  + AAS+++    YDL+FK+ +  P+  +   KL E Y   I+++P+  IED F  +D
Sbjct: 244 IGFDVAASELYNGKLYDLDFKSEHPKPENKLDYKKLYEKYSALIEKYPIVFIEDPFSEED 303

Query: 302 WSAWSTLTSRTQAQIFGNDLTQTNLRRVGLATEKKAGNAIGLRLNQAGTFTEVIEAFKLL 361
           W A+S ++S+T+ ++  +DLT TN++R+  A E K  NA+ +++NQ G+ +E I+A  + 
Sbjct: 304 WGAFSYMSSKTKVEVIADDLTVTNVKRLSKAIELKCANALLVKINQIGSLSETIDAANMA 363

Query: 362 KSNGFASVVVDRWGDTEDVFLADLAVGLSTGQMKCGAPVRSERVGKYNQIIRIEEELGAL 421
           K  G+  +V  R G+T+D F+A LAVGL  GQMK GAP RSER+ KYN+++RIE+ LG  
Sbjct: 364 KKAGWGLMVSHRSGETDDSFIAHLAVGLEAGQMKSGAPCRSERLAKYNELLRIEDNLGDS 423

Query: 422 SKYAG 426
           + YAG
Sbjct: 424 AIYAG 428


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 356 EAFKLLKSNGFASVVVDRWGDTEDVFL 382
           EA K+LKSNG  S+ VD  G  +D  L
Sbjct: 98  EAAKILKSNGAKSIAVDGMGFPKDAAL 124


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 256 AYDLEFKNPNSNPQEYMSSDKLAEIYLDNIKEFPVCSIEDGFQFDDWSAWSTLTSRTQAQ 315
           ++D E  N + N     + + + + Y  +I +  +C    GF+FD          ++ + 
Sbjct: 264 SHDTEMTNVHDNISRE-TLNGIYKCYFTDIDQLTICPSLQGFEFDSKGNLDVSLLKSLSD 322

Query: 316 IFGNDLTQTNLRRVGLATEKKAGNAIGLRLNQAGTFTEVIEAFKLL---KSNGFASVVVD 372
              N +T T+L  V    EK   +A  L  +  G    ++ A + +   + N +  VV  
Sbjct: 323 EV-NMITTTSL--VDNTMEKTDADAASLSSDSDGEEGHIVHALEEMAYDEENPYVDVVPK 379

Query: 373 RWGDTEDV-FLADLAVGLSTG 392
              ++E+  F  D  V ++ G
Sbjct: 380 AMDESENPDFGVDTEVNMADG 400


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 228 TDAIKQCGYVGKAEIAINAAASDMFKDGAYDLEFKNPNSNPQEYMSSD 275
           T+A+            I A +S +F  G Y+  F  PN   Q + +S+
Sbjct: 204 TEALSSLPLPRNLSADIPAKSSRLFPHGIYNFNFSAPNKRMQRFTASE 251


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 263 NPNSNPQEYMSSDKLAEIYLDNIKEFPVCSIEDGFQFDDWSA 304
           NP+S  Q    S++   IYL+ I +F + S+ D   F  WSA
Sbjct: 291 NPDSFFQLPDDSNEEVHIYLEVIVDFLLSSVSDIDSFVRWSA 332


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,681
Number of Sequences: 5004
Number of extensions: 74767
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 6
length of query: 433
length of database: 2,362,478
effective HSP length: 75
effective length of query: 358
effective length of database: 1,987,178
effective search space: 711409724
effective search space used: 711409724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)