GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002337-TA|BGIBMGA002337-PA|IPR000941|Enolase
         (433 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 263 NPNSNPQEYMSSDKLAEIYLDNIKEFP 289
           NP+  P EY+  D + + Y    KE P
Sbjct: 972 NPDQKPTEYLLEDSMKQQYGKRRKEPP 998


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 384  DLAVGLSTGQMKCGAPVRSERVGKYNQIIRIEEELGALS 422
            D  V +  G+  CG   R +  GK  Q  R++E +GA S
Sbjct: 1268 DFNVDIRYGK-NCGKGERIDMNGKLRQSPRLKELVGATS 1305


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 328 RVGLATEKKAGNAIGLRLNQAGTFTEVIEAFKLLKSNGFASVV 370
           RVG+ T       +G R  Q   +++ +E    ++S+G A  V
Sbjct: 366 RVGIHTGAVLAGVLGQRQWQFDVYSKDVELANKMESSGMAGRV 408


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,239
Number of Sequences: 429
Number of extensions: 4474
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 433
length of database: 140,377
effective HSP length: 60
effective length of query: 373
effective length of database: 114,637
effective search space: 42759601
effective search space used: 42759601
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)