GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    36   0.21 
UniRef50_Q9BK17 Cluster: NMDA-type ionotropic glutamate receptor...    33   0.86 
UniRef50_Q8TBR8 Cluster: AMOTL2 protein; n=1; Homo sapiens|Rep: ...    32   2.0  
UniRef50_Q74BS1 Cluster: CapK related-protein; n=1; Geobacter su...    32   2.6  
UniRef50_Q1VIG1 Cluster: 3-deoxy-manno-octulosonate cytidylyltra...    30   8.0  
UniRef50_A3LZY4 Cluster: U3 snoRNP protein; n=1; Pichia stipitis...    30   8.0  

>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   HRNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITLAI-YGAK 51
           HR  A W KWR  +  L + ++P++ K K  +TA+   I YG +
Sbjct: 208 HRIQAGWMKWRKASGVLCDAKVPIKLKGKFYRTAVRPTILYGTE 251


>UniRef50_Q9BK17 Cluster: NMDA-type ionotropic glutamate receptor
           NMR-1; n=2; Caenorhabditis|Rep: NMDA-type ionotropic
           glutamate receptor NMR-1 - Caenorhabditis elegans
          Length = 1025

 Score = 33.5 bits (73), Expect = 0.86
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 15  WQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTK 65
           +QKW  LT  LG  R P R K  + +  +     G + C + E++ R + +
Sbjct: 879 FQKWHDLT--LGKKRRPYRLKYNLDRMIVRRGFSGLERCSFQELRERRQIR 927


>UniRef50_Q8TBR8 Cluster: AMOTL2 protein; n=1; Homo sapiens|Rep:
          AMOTL2 protein - Homo sapiens (Human)
          Length = 102

 Score = 32.3 bits (70), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 5  KGSCHRNCAVWQKWRSLTEALGNPRMPVRTKSKIS 39
          K SC R+  +W+KW   +   G+ R PVR+ S  S
Sbjct: 10 KRSCARSRPMWRKWSGCSRRSGSCRQPVRSGSSWS 44


>UniRef50_Q74BS1 Cluster: CapK related-protein; n=1; Geobacter
           sulfurreducens|Rep: CapK related-protein - Geobacter
           sulfurreducens
          Length = 453

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 5   KGSCHRNCAVWQKWRS---LTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPR 61
           + SC R   +W  W+S   +    GNP +P   K K+    ++  IY    C  +E   R
Sbjct: 142 RNSCARRHDLWTGWKSGEPIAAVWGNPYLPHGVKQKLRDWLVSPMIYLDTMCISEEAIVR 201

Query: 62  AKTKCKR 68
              + KR
Sbjct: 202 FADEWKR 208


>UniRef50_Q1VIG1 Cluster: 3-deoxy-manno-octulosonate
           cytidylyltransferase; n=1; Psychroflexus torquis ATCC
           700755|Rep: 3-deoxy-manno-octulosonate
           cytidylyltransferase - Psychroflexus torquis ATCC 700755
          Length = 151

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 30  MPVRTKSKISKTAIT-LAIYGAKYCRYDEMKPRAKTKCKRDENAKMIK 76
           +P+  K+KIS+ A+  + IYG  Y    ++    K+K ++DE+ ++++
Sbjct: 69  IPLNKKNKISENAMKQVCIYGYPYKLLKKIPQNKKSKLEKDEDIEILR 116


>UniRef50_A3LZY4 Cluster: U3 snoRNP protein; n=1; Pichia stipitis|Rep:
            U3 snoRNP protein - Pichia stipitis (Yeast)
          Length = 2507

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)

Query: 19   RSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCK 67
            +SLT A+  PR  +  K K+    +  ++     C +D +KP  +T  K
Sbjct: 1248 QSLTSAIDKPRSQIELKDKVLILRVLSSLVDNFECSFDNIKPLYETVSK 1296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,670,341
Number of Sequences: 1657284
Number of extensions: 2580173
Number of successful extensions: 5575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5572
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 575,637,011
effective HSP length: 64
effective length of query: 22
effective length of database: 469,570,835
effective search space: 10330558370
effective search space used: 10330558370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)