GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   1.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   2.4  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    19   9.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 25  LGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQ 79
           L + R P    S+   + ++L  Y    C+ +  KP    +C +    K+ + ++
Sbjct: 848 LYDARKPYVNGSEYHPSIVSLGEYKCVTCKCENGKPTCWRECDKATCEKLFRMKK 902


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 12  CAVWQKWRSLTE---ALGNPRMPVRTKSKISK 40
           CA W K R   E    L NP  P    +K+S+
Sbjct: 231 CADWYKGRLTDEQLKELENPPTPKPRPTKVSR 262


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 18.6 bits (36), Expect = 9.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 19  RSLTEALGNPRMPVRTKSKISKTAITLAI 47
           RS  ++    R P+ +++KI+    T+A+
Sbjct: 241 RSSQKSAPGKRTPLISRAKINTVKQTIAV 269


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,419
Number of Sequences: 317
Number of extensions: 532
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 86
length of database: 114,650
effective HSP length: 47
effective length of query: 39
effective length of database: 99,751
effective search space:  3890289
effective search space used:  3890289
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)