GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   0.49 
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   2.6  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    23   4.6  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    23   6.0  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    23   8.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   8.0  

>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 20  SLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAK 73
           ++TEAL    +  R  SK ++    L    A Y RY ++ P A+T C+ ++  +
Sbjct: 177 AVTEALMKSLLKSRVPSKPTEELYQLTDQEA-YFRYSDILPLAETTCQTNKTER 229


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 3   SRKGSCHRNCAVWQKWRSLTEALG 26
           S  G+  +N A+W +W SL  ALG
Sbjct: 244 SGDGTFRKNIALWNEW-SLKTALG 266


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 3   SRKGSCHRNCAVWQKWRSLTEALGNPR 29
           ++KG  +R    +  W  +T++L NP+
Sbjct: 173 AKKGFSNRKKMFYDLWHLITDSLENPK 199


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 23  EALGNPRMPVRTKSKISKTAITLAIYGAK 51
           +AL   R  +   SK S+T     +YG+K
Sbjct: 424 QALSTLRSDIEKSSKFSRTNALKTLYGSK 452


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 15  WQKWRSLTEALGNPRMPVRTKSKISKTAIT 44
           W+ W+      GNP   V+   +I ++  T
Sbjct: 700 WKAWQEFEIRYGNPEETVKEMLRIKRSVQT 729


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 4    RKGSCHRNCAVWQKWRSLTEALGNPR 29
            R   C RN  VWQ+   +   + +PR
Sbjct: 1475 RLKGCQRNVDVWQRMLRIRSLVISPR 1500


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,305
Number of Sequences: 5004
Number of extensions: 10477
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)