GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           27   1.4  
08_02_0891 + 22312537-22312720,22313446-22313525,22314484-223146...    26   4.3  
05_01_0210 + 1583176-1584177                                           25   5.7  
08_01_0881 + 8650598-8650807                                           25   7.5  
07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562...    25   10.0 
07_03_0719 + 20920331-20920535,20920588-20920763,20920901-209211...    25   10.0 
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801...    25   10.0 
07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340...    25   10.0 
04_01_0111 - 1136354-1136793,1136878-1136959,1137574-1137657,113...    25   10.0 

>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 13  AVWQKWRSLTEALGNPRMPVRT 34
           +V Q W  + ++L NPR+P+RT
Sbjct: 360 SVEQWWNLVVDSLNNPRIPLRT 381


>08_02_0891 +
           22312537-22312720,22313446-22313525,22314484-22314640,
           22314661-22314716
          Length = 158

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 36  SKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDEN 71
           +K +   I   IYG+ +   +E  PR + KCK + N
Sbjct: 70  AKRAYVTIFAEIYGSFFLPKNERDPRYERKCKENTN 105


>05_01_0210 + 1583176-1584177
          Length = 333

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 7   SCHRNCAVWQKWRSLTEALGNPRMPVRTKSK 37
           S  RN A+W+   +   ALG  R P + KSK
Sbjct: 79  STKRNKALWEAASARLHALGFARTPDQCKSK 109


>08_01_0881 + 8650598-8650807
          Length = 69

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 4  RKGSCHRNCAVWQKWRSLTEAL-------GNPRMPVRTKSKISKTAITLA 46
          R+     N   W KWRSL   L       G+P  P  T + +++ +I +A
Sbjct: 19 RRVGPEENEVEWSKWRSLASPLVEKSERNGSPSTPTNTYAFMAEDSIIVA 68


>07_03_0806 +
           21654057-21655154,21655728-21655796,21656110-21656274,
           21656416-21656589,21659506-21659769,21659957-21660070
          Length = 627

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 6/26 (23%), Positives = 16/26 (61%)

Query: 7   SCHRNCAVWQKWRSLTEALGNPRMPV 32
           +CHR+ + W++  ++ ++   P + V
Sbjct: 564 TCHRSLSAWERLSAVIQSFARPEISV 589


>07_03_0719 +
           20920331-20920535,20920588-20920763,20920901-20921111,
           20921240-20921477,20921613-20921763,20921878-20922186
          Length = 429

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 28  PRMPVRTKSKISKTAITLAIYGAKYC 53
           PR P     +IS  A++ + +G  YC
Sbjct: 392 PRQPAYFNVRISSLAVSSSSFGESYC 417


>07_01_0954 -
          8016804-8016905,8017409-8017469,8017543-8017649,
          8018278-8018382,8018460-8018546,8018631-8018711,
          8018872-8018944,8019288-8019400,8019695-8019788,
          8020060-8020115,8020212-8020295,8020384-8020476,
          8020592-8020765,8020956-8021099,8021225-8021380
          Length = 509

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 18 WRSLTEALGNPRMPVRTKSKISKTAITLAIYGA 50
          W + T A   PR P R +S+++    T A   A
Sbjct: 6  WAATTAAAAPPRPPARCRSRVAALRRTAAASAA 38


>07_01_0451 -
          3404749-3405171,3405444-3405599,3405711-3406583,
          3406847-3406942
          Length = 515

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 58 MKPRAKTKCKRDENAKMIKRRQWTGQIA 85
          M+ R +   K D + +M+KR++W  Q++
Sbjct: 1  MEKRKRIASKEDLHGQMMKRKKWRLQLS 28


>04_01_0111 -
           1136354-1136793,1136878-1136959,1137574-1137657,
           1137749-1137931,1138263-1138437,1138539-1138777
          Length = 400

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 63  KTKCKRDENAKMIKRRQWTGQIAK 86
           KT+     NA+  K + WTG I K
Sbjct: 340 KTEASSTNNAEAEKPKHWTGNIPK 363


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,105
Number of Sequences: 37544
Number of extensions: 73926
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)