GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 29   0.71 
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   27   2.9  
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)               26   5.0  
SB_23767| Best HMM Match : DicB (HMM E-Value=7.9)                      26   5.0  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.0  
SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)                      26   5.0  
SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)          26   5.0  
SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_54043| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)                        25   8.7  

>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 10  RNCAV--WQKWRSLTEALGNPRMPVRTKSK 37
           RNCAV  W  W   T   GN     RT++K
Sbjct: 91  RNCAVSAWSSWGPCTHQCGNAGTQTRTRTK 120


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 10  RNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYC 53
           R  + W K++ L   L +  + +RT+ K+  + +  A+  A  C
Sbjct: 538 RTRSAWGKFKELLPVLSSKSLSLRTRGKVYSSCVRSAMLYAGEC 581


>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 24  ALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAK 63
           ++GN    +  KSK+S+T++  AI  A +    E+K R K
Sbjct: 204 SMGNLANELYDKSKLSQTSLLPAIQIANFAGNQEVKLRVK 243


>SB_32958| Best HMM Match : Transformer (HMM E-Value=2.9)
          Length = 253

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 3  SRKGSCHRNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITL 45
          SR+G    + A   KWR+L E L  P +P R ++  +K  +++
Sbjct: 32 SRRGVTLVDTACQHKWRNLKEVL-VPSLPERQRNLTNKLLMSI 73


>SB_23767| Best HMM Match : DicB (HMM E-Value=7.9)
          Length = 344

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 20 SLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMK 59
          ++T ALG  ++P  T++ +SK      +Y  K    D++K
Sbjct: 35 NVTFALGRLKVPFSTRNVLSKVCRRALVYDVKPKAVDKLK 74


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 10  RNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYC 53
           R  + W K++ L   L +  + +RT+ K+  + +  A   A  C
Sbjct: 877 RTRSAWGKFKELLPVLSSKSLSLRTRGKVYSSCVRSATLYAGEC 920


>SB_270| Best HMM Match : PHD (HMM E-Value=0.0037)
          Length = 251

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 10  RNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYC 53
           R  + W K++ L   L +  + +RT+ K+  + +  A   A  C
Sbjct: 179 RTRSAWGKFKELLPVLSSKSLSLRTRGKVYSSCVRSATLYAGEC 222


>SB_11594| Best HMM Match : F5_F8_type_C (HMM E-Value=4.4e-35)
          Length = 1814

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 15  WQKWRSLTEALGNPRMPVRTK 35
           WQKW+ +T++L    M +R +
Sbjct: 666 WQKWQGVTKSLKEASMKIRPR 686


>SB_23835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 10  RNCAVWQKWRSLTEALGNPRMP 31
           R C   ++WRS TE +G  R P
Sbjct: 170 RLCRQRKRWRSATEGMGPSRYP 191


>SB_54043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 53  CRYDEMKPRAKTKCKRDENAKMIKRRQW 80
           C  +E K  +  KC  D++ K+  RR W
Sbjct: 120 CVSEENKRLSSVKCAFDKSNKLENRRHW 147


>SB_1136| Best HMM Match : HC2 (HMM E-Value=4.2)
          Length = 551

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/26 (30%), Positives = 19/26 (73%)

Query: 22  TEALGNPRMPVRTKSKISKTAITLAI 47
           + A+ NP  P +++ ++SKT+++ +I
Sbjct: 405 SRAVANPLPPTKSRKELSKTSVSKSI 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,056,496
Number of Sequences: 59808
Number of extensions: 92241
Number of successful extensions: 218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 11
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)