GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   0.39 
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          23   1.2  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   1.2  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   1.2  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   1.2  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   2.7  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         21   4.8  
AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family prote...    21   4.8  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 39  SKTAITLAIYGAKYCRYDEMKPRAKTKCKR 68
           SK+A+++A    K C++DE+  R K +  R
Sbjct: 483 SKSALSIAESELKICQHDEVTERRKLESLR 512


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 3   SRKGSCHRNCAVWQKWRSLTEALGNPRMP 31
           ++ G C + C    K+RS++     P  P
Sbjct: 202 TKNGCCRKTCGTGWKYRSISSLHAPPSHP 230


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 26  GNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQW 80
           G+P  P    S+   T   L +  A  C ++  K     +C R ++  ++   +W
Sbjct: 387 GSPTAPWALVSREEATLRALRLAEAVGCPHEPSKLSDAVECLRGKDPHVLVNNEW 441


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 26  GNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQW 80
           G+P  P    S+   T   L +  A  C ++  K     +C R ++  ++   +W
Sbjct: 387 GSPTAPWALVSREEATLRALRLAEAVGCPHEPSKLSDAVECLRGKDPHVLVNNEW 441


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/55 (21%), Positives = 23/55 (41%)

Query: 26  GNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQW 80
           G+P  P    S+   T   L +  A  C ++  K     +C R ++  ++   +W
Sbjct: 273 GSPTAPWALVSREEATLRALRLAEAVGCPHEPSKLSDAVECLRGKDPHVLVNNEW 327


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 52   YCRYDEMKPRAKT 64
            YCR DEMK +  T
Sbjct: 3272 YCRLDEMKTQINT 3284


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 19   RSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEM 58
            ++LT +  N  + +     I  + +  AI    YCRYD +
Sbjct: 1669 QALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNV 1708


>AB107248-1|BAE72063.1|  278|Anopheles gambiae Bcl-2 family protein
           Anob-1 protein.
          Length = 278

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 18  WRSLTEALGNPRMPVRTKSKISKTAITLAI 47
           W  L + +  P+  +     +S TA+TLA+
Sbjct: 226 WLGLQDHVHPPQPEISVTGWVSITALTLAV 255


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,308
Number of Sequences: 2123
Number of extensions: 2317
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 516,269
effective HSP length: 53
effective length of query: 33
effective length of database: 403,750
effective search space: 13323750
effective search space used: 13323750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)