GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025981-1|AAH25981.2|  102|Homo sapiens AMOTL2 protein protein.       32   0.25 
AL136444-2|CAI20337.1|  462|Homo sapiens opioid receptor, mu 1 p...    27   9.3  
AL136444-1|CAC15482.1|  454|Homo sapiens opioid receptor, mu 1 p...    27   9.3  
AL132774-1|CAI20458.1|  462|Homo sapiens opioid receptor, mu 1 p...    27   9.3  

>BC025981-1|AAH25981.2|  102|Homo sapiens AMOTL2 protein protein.
          Length = 102

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 5  KGSCHRNCAVWQKWRSLTEALGNPRMPVRTKSKIS 39
          K SC R+  +W+KW   +   G+ R PVR+ S  S
Sbjct: 10 KRSCARSRPMWRKWSGCSRRSGSCRQPVRSGSSWS 44


>AL136444-2|CAI20337.1|  462|Homo sapiens opioid receptor, mu 1
          protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 1  MASRKGSCHRNCAVWQKWRSLTEALGNPRMPV 32
          +++R G C +   +WQ+ +   EALG  ++ V
Sbjct: 16 VSARTGFCKKQQELWQRRKEAAEALGTRKVSV 47


>AL136444-1|CAC15482.1|  454|Homo sapiens opioid receptor, mu 1
          protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 1  MASRKGSCHRNCAVWQKWRSLTEALGNPRMPV 32
          +++R G C +   +WQ+ +   EALG  ++ V
Sbjct: 16 VSARTGFCKKQQELWQRRKEAAEALGTRKVSV 47


>AL132774-1|CAI20458.1|  462|Homo sapiens opioid receptor, mu 1
          protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 1  MASRKGSCHRNCAVWQKWRSLTEALGNPRMPV 32
          +++R G C +   +WQ+ +   EALG  ++ V
Sbjct: 16 VSARTGFCKKQQELWQRRKEAAEALGTRKVSV 47


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,105
Number of Sequences: 224733
Number of extensions: 357708
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 709
Number of HSP's gapped (non-prelim): 4
length of query: 86
length of database: 73,234,838
effective HSP length: 64
effective length of query: 22
effective length of database: 58,851,926
effective search space: 1294742372
effective search space used: 1294742372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)