GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002336-TA|BGIBMGA002336-PA|undefined
         (86 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    33   0.019
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    33   0.019
Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical pr...    27   1.6  
Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical p...    25   6.6  
AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-relat...    25   6.6  

>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 15  WQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTK 65
           +QKW  LT  LG  R P R K  + +  +     G + C + E++ R + +
Sbjct: 879 FQKWHDLT--LGKKRRPYRLKYNLDRMIVRRGFSGLERCSFQELRERRQIR 927


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 15  WQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTK 65
           +QKW  LT  LG  R P R K  + +  +     G + C + E++ R + +
Sbjct: 879 FQKWHDLT--LGKKRRPYRLKYNLDRMIVRRGFSGLERCSFQELRERRQIR 927


>Z73977-1|CAA98290.1|  573|Caenorhabditis elegans Hypothetical
           protein T28B11.1 protein.
          Length = 573

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 8   CHRNCAVWQKWRSLTEALGNPRMPVRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCK 67
           C R  A+ +   ++T +   PR P  ++S  S +A + +I        D +   +KTK K
Sbjct: 74  CDRRRAILEGVSTVTPSR-LPRTPKNSESSDSGSASSSSIASTSSSEADSVSSSSKTKTK 132

Query: 68  RD--ENAKMIKRR 78
           +   E  K ++RR
Sbjct: 133 QQQTEREKELRRR 145


>Z69661-5|CAA93495.2|  346|Caenorhabditis elegans Hypothetical
          protein F48F7.7 protein.
          Length = 346

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)

Query: 32 VRTKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENA 72
          +R+   I+   + + I+GA + ++ E + R +T C+  E +
Sbjct: 29 LRSNEPITARFLKICIHGAAHTKWSEGERRYRTNCEGKEES 69


>Z93393-11|CAB07698.2|  536|Caenorhabditis elegans Hypothetical
           protein Y48E1B.13a protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 34  TKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQWTGQ 83
           ++S++ +T    + +  KYC      PR       +EN K ++RR  T Q
Sbjct: 265 SQSRMPRTDAKKSNHKHKYCYEMNSNPRGTVLILSNENFKNMERRVGTKQ 314


>AF088285-1|AAC98292.1|  536|Caenorhabditis elegans caspase-related
           protein 1A protein.
          Length = 536

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 34  TKSKISKTAITLAIYGAKYCRYDEMKPRAKTKCKRDENAKMIKRRQWTGQ 83
           ++S++ +T    + +  KYC      PR       +EN K ++RR  T Q
Sbjct: 265 SQSRMPRTDAKKSNHKHKYCYEMNSNPRGTVLILSNENFKNMERRVGTKQ 314


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.128    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,188
Number of Sequences: 27539
Number of extensions: 62237
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 12,573,161
effective HSP length: 65
effective length of query: 21
effective length of database: 10,783,126
effective search space: 226445646
effective search space used: 226445646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)