GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002335-TA|BGIBMGA002335-PA|IPR008504|Protein of unknown
function DUF786
         (113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    46   1e-06
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   1.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   1.3  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    25   2.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.2  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    25   3.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    25   3.8  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    24   5.1  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    23   8.9  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    23   8.9  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    23   8.9  

>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 46.4 bits (105), Expect = 1e-06
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 25  NAVVVEYCRTSMAALSGSTAGVLGLTGLNDFAFYVFAVVML-WIMFLVKVGPHWSKYFIT 83
           N  VV + R   ++  G  AG+LGLT     A YV     + +++F +K+  + +KY+  
Sbjct: 2   NPKVVSFVRNLTSSFFGCAAGILGLTSYEGLALYVLGYFFVSFLLFALKMRGNLTKYYQP 61

Query: 84  RQSVLTNGFFGALFTYVLFWTFIYGMVH 111
                         +YVL WT  Y +V+
Sbjct: 62  GYKFWIAKILDGAPSYVLTWTLFYSLVY 89


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 35  SMAALSGSTAGVLGLTGLNDFAFYVFAVVMLWIMFLVKVGPHWSKYFI 82
           S   + G T G LG+  +ND   YV+  V    + L+++     ++F+
Sbjct: 751 SQQEIVGQTLGELGVDDVNDLISYVYHDVERQSVKLLEIHQRLQRHFV 798


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 27  VVVEYCRTSMAALSGSTAGVLGLTGLNDFAFYVFAVVMLWIMFLVKVGPHWSKYFITRQS 86
           VV+ Y R ++  +S S    L ++ L  F   +F + +L   F+      W K FIT+++
Sbjct: 173 VVIAYLRFALRTMSFSNFKELVIS-LTYFWGLLFVIFLLGNGFVYVPVSMWKKAFITKRA 231

Query: 87  VL 88
            L
Sbjct: 232 AL 233


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 17  YSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNDFAF--YVFAVVML 65
           Y   AL    V +E CR  +       AG  G+ GL+D  F  Y+F    L
Sbjct: 176 YKAIALYITHVYLEVCRELVQTYRLEPAGSHGVWGLDDHFFIPYIFGSAQL 226


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 27  VVVEYCRTSMAALSGSTAGVLGLTGLNDFAFYVFAVVML--WIMFLVKVGPHWSKYFITR 84
           VV  YCR     L+  + G+     +  F F       L  W++  +   P    ++I  
Sbjct: 140 VVPPYCRK---VLTYKSLGIRTAVYVGAFCFVNCFKTRLSNWMLLPISANP----WYIQV 192

Query: 85  QSVLTNGFFGALFTYVLFWTF 105
              +T+GFF  LF   L++ F
Sbjct: 193 AFCVTSGFFSYLFINALYYLF 213


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
          pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 7/31 (22%), Positives = 18/31 (58%)

Query: 41 GSTAGVLGLTGLNDFAFYVFAVVMLWIMFLV 71
          G++   LG+T LND+  +    + + +++ +
Sbjct: 22 GASPSYLGVTHLNDYLMFYLTFIFIGVIYAI 52


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 5/16 (31%), Positives = 13/16 (81%)

Query: 91  GFFGALFTYVLFWTFI 106
           G +G++ +Y+++W F+
Sbjct: 289 GTYGSILSYIIYWLFV 304


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 10  NKPEPVAYSEAALRNNAVVVEYCRTSMAALS 40
           N PE VA++E+ +R   +  E     + A+S
Sbjct: 595 NVPEDVAFAESRIRAETIAAEDILQDLGAIS 625


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 55  FAFYVFAVVMLWIMFLVKVGPHWSKY 80
           F F++  V +  I ++  +  HWS +
Sbjct: 429 FVFFIILVCLAVIFYVFNIRIHWSDF 454


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 77  WSKYFITRQSVLTNGFF 93
           W K+F TR+  L +G F
Sbjct: 381 WQKFFETRRKSLVDGIF 397


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)

Query: 94  GALFTYVLFWTF--IYGMVHVY 113
           G   TY+LFW F  + G + VY
Sbjct: 172 GGTITYILFWMFSLLVGSLVVY 193


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,116
Number of Sequences: 5004
Number of extensions: 16405
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 11
length of query: 113
length of database: 2,362,478
effective HSP length: 64
effective length of query: 49
effective length of database: 2,042,222
effective search space: 100068878
effective search space used: 100068878
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 48 (23.4 bits)