Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002335-TA|BGIBMGA002335-PA|IPR008504|Protein of unknown
function DUF786
(113 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0080 - 535443-535481,535569-535698,536483-536586,536686-53... 31 0.21
07_03_1212 - 24913497-24913718,24914398-24914670 30 0.49
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 29 0.86
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91... 28 1.5
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 28 2.0
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 28 2.0
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 27 2.6
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 27 4.6
01_05_0350 - 21262132-21262539,21262905-21263033,21263684-212639... 26 6.1
07_01_0369 - 2743412-2743502,2744007-2744174,2744265-2744380,274... 26 8.0
>05_01_0080 -
535443-535481,535569-535698,536483-536586,536686-536903,
537755-537762,538146-538183,538475-538668,539168-539296,
539392-539481,539726-539839,540008-540154,540228-540293,
540876-540987
Length = 462
Score = 31.1 bits (67), Expect = 0.21
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 29 VEYCRTSMAALSGSTAGVLGLTGLNDFAFYVF---AVVMLWIMFLVKVGPHWSKYFITRQ 85
V + R + G G + L G A +V +V + +L+K+ + F
Sbjct: 379 VHWIRQVLGLACGLLWGAVPLVGAIWIALFVTISTGLVYWYYAYLLKID---EEDFGGHG 435
Query: 86 SVLTNGFFGALFTYVLFWTFIYGMVH 111
++L G F + ++L WT IY +VH
Sbjct: 436 ALLQEGMFASFTLFLLSWTLIYSLVH 461
>07_03_1212 - 24913497-24913718,24914398-24914670
Length = 164
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 37 AALSGSTAGVLGLTGLNDFAFYVFAVVMLWIMFLVKVGPHWS 78
AA G+ A +LG +A A++ LW MF V WS
Sbjct: 28 AAAGGAEAALLGKGRYKAWALAAIALLALWSMFAASVTIRWS 69
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 60 FAVVMLWIMFLVKVGPHW--SKYFITRQSVLTNGFFGALFTYVLFWTFIYGMV 110
F V W FL VGP + F+ ++ T+ GA F Y L W + GMV
Sbjct: 42 FRVQPRWRKFLAHVGPGALVAIGFLDPSNLETDMQAGADFKYELLWVILVGMV 94
>12_01_0120 +
912312-912615,913145-913371,913507-913754,914293-914656,
914758-915154,915671-915693,916645-916987,917513-917532,
918418-918527,919484-920255
Length = 935
Score = 28.3 bits (60), Expect = 1.5
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 87 VLTNGFFGALFTYVLFWTFIYGMVHVY 113
+ ++ + LF Y L W+ +YG +++Y
Sbjct: 81 MFSSNYVATLFPYFLHWSRVYGSIYLY 107
>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 89 TNGFFGALFTYVLFWTFIYGMVHVY 113
TN F LF + L W YG V +Y
Sbjct: 1065 TNNFISTLFPHFLLWRETYGPVFLY 1089
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 66 WIMFLVKVGPHW--SKYFITRQSVLTNGFFGALFTYVLFWTFIYGMVHV 112
W FL VGP + S ++ ++ T+ G+ Y L W ++G + V
Sbjct: 69 WKRFLAHVGPGFVISIAYLDPSNLQTDLVAGSSHRYSLLWVLLFGFIFV 117
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 35 SMAALSGSTAGVLGLTGLNDFAFYVFAVVML-WIMFLVKVGPHWSKYFITRQSVLTNGFF 93
SM ++ G+ G G FA+ +++ L+ V HW+ Y +L N +
Sbjct: 834 SMIQMADVGIGISGQEGRQAVMASDFAMGQFRFLVDLLLVHGHWN-YQRMGYMILYNFYR 892
Query: 94 GALFTYVLFW 103
A F +VLFW
Sbjct: 893 NATFVFVLFW 902
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 35 SMAALSGSTAGVLGLTGLNDFAFYVFAVVML-WIMFLVKVGPHWSKYFITRQSVLTNGFF 93
SM ++ G+ G G FA+ ++ L+ V HW+ Y +L N +
Sbjct: 1015 SMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWN-YQRIAYMILYNFYR 1073
Query: 94 GALFTYVLFWTFIY 107
A+F +LFW ++
Sbjct: 1074 NAVFVLMLFWYILH 1087
>01_05_0350 -
21262132-21262539,21262905-21263033,21263684-21263998,
21265015-21265140,21266499-21266849
Length = 442
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 49 LTGLNDFAFYVFAVVMLWIMFLVKV-------GPHWSKYFITRQSVLTNG 91
L G DFAFY A+ + FL PH S YF + L G
Sbjct: 364 LMGAEDFAFYADAIPATYYYFLGMYNETRGPQAPHHSPYFTINEDALPYG 413
>07_01_0369 -
2743412-2743502,2744007-2744174,2744265-2744380,
2744981-2745136
Length = 176
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 13 EPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLN 53
E VA EAA + A ++ Y R + GS +GL G++
Sbjct: 82 EEVAKMEAASKEIAEIIRYNRFHRRCIMGSVVLGVGLAGVS 122
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.329 0.138 0.438
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,935
Number of Sequences: 37544
Number of extensions: 95599
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 12
length of query: 113
length of database: 14,793,348
effective HSP length: 73
effective length of query: 40
effective length of database: 12,052,636
effective search space: 482105440
effective search space used: 482105440
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 54 (25.8 bits)
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