GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002335-TA|BGIBMGA002335-PA|IPR008504|Protein of unknown
function DUF786
         (113 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001409-1|AAH01409.1|  110|Homo sapiens transmembrane protein 9...   139   2e-33
BC070266-1|AAH70266.1|  393|Homo sapiens cytotoxic and regulator...    28   7.5  
AB209830-1|BAD93067.1|  196|Homo sapiens class-I MHC-restricted ...    28   7.5  

>BC001409-1|AAH01409.1|  110|Homo sapiens transmembrane protein 93
           protein.
          Length = 110

 Score =  139 bits (336), Expect = 2e-33
 Identities = 64/113 (56%), Positives = 84/113 (74%), Gaps = 3/113 (2%)

Query: 1   MSAVTKFKENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNDFAFYVF 60
           M+AV   +E  P     SEAA+R NA V++YCRTS++ALSG+TAG+LGLTGL  F FY+ 
Sbjct: 1   MAAVVAKREGPP---FISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLL 57

Query: 61  AVVMLWIMFLVKVGPHWSKYFITRQSVLTNGFFGALFTYVLFWTFIYGMVHVY 113
           A V+L ++ ++K G  W+KYF +R+ + T G  G LFTYVLFWTF+YGMVHVY
Sbjct: 58  ASVLLSLLLILKAGRRWNKYFKSRRPLFTGGLIGGLFTYVLFWTFLYGMVHVY 110


>BC070266-1|AAH70266.1|  393|Homo sapiens cytotoxic and regulatory T
           cell molecule protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 39  LSGSTAGVLGLTGLNDFAFYVFAVVMLWIMFLVKVGPHWSK 79
           L+   +G+L LT ++   F +F +V L+IM L K    W K
Sbjct: 281 LARKKSGILLLTLVSFLIFILFIIVQLFIMKLRKTHVIWKK 321


>AB209830-1|BAD93067.1|  196|Homo sapiens class-I MHC-restricted T
           cell associated molecule variant protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 39  LSGSTAGVLGLTGLNDFAFYVFAVVMLWIMFLVKVGPHWSK 79
           L+   +G+L LT ++   F +F +V L+IM L K    W K
Sbjct: 84  LARKKSGILLLTLVSFLIFILFIIVQLFIMKLRKAHVIWKK 124


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.329    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,025,602
Number of Sequences: 224733
Number of extensions: 574785
Number of successful extensions: 3953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3950
Number of HSP's gapped (non-prelim): 3
length of query: 113
length of database: 73,234,838
effective HSP length: 80
effective length of query: 33
effective length of database: 55,256,198
effective search space: 1823454534
effective search space used: 1823454534
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 58 (27.5 bits)