GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002335-TA|BGIBMGA002335-PA|IPR008504|Protein of unknown
function DUF786
         (113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 64  MLWIMFLVKVGPHWSKYFITRQSVLTNGFFGAL 96
           +LW M   ++ P     +  R+ +L NG    L
Sbjct: 808 ILWNMNNKRLDPKSDSRYTIREEILANGVLSDL 840


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 82  ITRQSVLTNGFFGALFTYVLFW 103
           +T   +   GF G + T ++ W
Sbjct: 38  LTYVVIFVTGFVGNIITCIVIW 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.138    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,396
Number of Sequences: 429
Number of extensions: 874
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 113
length of database: 140,377
effective HSP length: 50
effective length of query: 63
effective length of database: 118,927
effective search space:  7492401
effective search space used:  7492401
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.3 bits)
S2: 39 (19.8 bits)