Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002334-TA|BGIBMGA002334-PA|undefined
(92 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0049 - 532308-532961 28 0.83
01_01_0505 - 3695937-3695972,3696251-3696316,3696658-3696747,369... 28 0.83
08_01_0566 - 5028512-5029150 28 1.1
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148... 27 1.9
04_01_0050 - 536390-537231,538108-538375 27 2.5
03_02_0575 + 9581220-9581622,9581741-9583035 26 4.4
09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544 25 5.9
09_01_0150 - 2244757-2245303,2252925-2253277 25 5.9
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 25 5.9
08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966... 25 5.9
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143... 25 7.8
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 25 7.8
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 25 7.8
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 25 7.8
>04_01_0049 - 532308-532961
Length = 217
Score = 28.3 bits (60), Expect = 0.83
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 15 IYIFGTVCLMIATGMLVLGTLVDTYNLVNFYVW 47
+Y FG + L I TG VL T+ L+ +VW
Sbjct: 67 VYAFGVLLLEIVTGRRVLCKFQGTFQLLVDWVW 99
>01_01_0505 -
3695937-3695972,3696251-3696316,3696658-3696747,
3696934-3697143,3697371-3697404,3697566-3697912
Length = 260
Score = 28.3 bits (60), Expect = 0.83
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 18 FGTVCLMIATGMLVLGTLVDTYNLVNFYVWYAFLYLSVYF 57
F V I +L + +VD +++ +Y + FL +++YF
Sbjct: 87 FRVVSFFILASLLAVDVVVDGWSVFLYYTQWTFLLVTLYF 126
>08_01_0566 - 5028512-5029150
Length = 212
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 53 LSVYFVMAMFSVGVNVITTGT-ISKRQSVCTLFTVV 87
L ++F+ A+ GVN+IT G +S R V TVV
Sbjct: 121 LQLFFLWALAVAGVNLITAGVYLSSRDDVSRSCTVV 156
>06_03_0293 +
19212963-19212965,19213900-19214235,19214658-19214870,
19216134-19216408,19216504-19216615,19217181-19217417,
19217445-19217462
Length = 397
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 8 VLRYFKMIYIFGTVCLMIATGMLVLG-TLVDTYNLVNFYVWYAFLYLSVYFVMAMFSV 64
VLR+F I+ + TG + T D LV A YLS YF++ +F+V
Sbjct: 51 VLRFFTDIFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYAIAKRYLSTYFLIDVFAV 108
>04_01_0050 - 536390-537231,538108-538375
Length = 369
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 15 IYIFGTVCLMIATGMLVLGTLVDTYNLVNFYVW 47
+Y FG + L I TG L T+ L+ +VW
Sbjct: 216 VYAFGVLLLEIVTGRRALCKFQGTFQLLVDWVW 248
>03_02_0575 + 9581220-9581622,9581741-9583035
Length = 565
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/48 (18%), Positives = 26/48 (54%)
Query: 44 FYVWYAFLYLSVYFVMAMFSVGVNVITTGTISKRQSVCTLFTVVWSCC 91
F +++ F ++++ +A+ V +V+ +K+Q + + ++W C
Sbjct: 428 FLIFFVFDSVALFISLAVVVVQTSVVVIERKAKKQMMAVINKLMWVAC 475
>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
Length = 165
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 10 RYFKMIYIFGTVCLMIATGMLVLGTLVDTYNL---VNFYVWY 48
RY M+Y+ C + G+ + G + + + V FY++Y
Sbjct: 100 RYRHMVYVGSWTCESLRKGVFIAGAVFVVFTMILNVYFYMYY 141
>09_01_0150 - 2244757-2245303,2252925-2253277
Length = 299
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 21 VCLMIATGMLVLGTLVDTYN----LVNFYVWYAFLYLSVYFVMAMFSVGVNV 68
V L++A L+ +V Y L++ +V F++L + V+ FSV V+V
Sbjct: 139 VALLVAMAGLLAFLMVKKYYVPFLLLSLFVLVGFIFLVYFSVLCSFSVVVSV 190
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 44 FYVWYAFLYLSVYFVMAMFSVGVNVITTGTISKRQSVCTLFTVVWSCC 91
F V+ F L+++ +A+ V ++I +KR+ V + ++W C
Sbjct: 423 FLVFLVFDALALFISLAVVVVQTSLIVVEQKAKRRMVFVMNKLMWLAC 470
>08_01_0963 -
9661699-9661760,9662095-9662818,9662860-9663265,
9663488-9665037
Length = 913
Score = 25.4 bits (53), Expect = 5.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2 FLNHEQVLRYFKMIYIFGTVCLMIATGMLVLGTLVDT 38
FL + V ++ Y+ GT L +TG++V+ T DT
Sbjct: 239 FLVLDDVWKHEVWTYLLGTPLLAASTGIVVITTRHDT 275
>11_01_0180 -
1431758-1431838,1431975-1432061,1432180-1432230,
1432275-1432367,1432496-1432568,1432657-1432751,
1433428-1433515,1433647-1433936
Length = 285
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 41 LVNFYVWYAFLYLSVYFVMAMFSV 64
+ N+ +W F +L+ YFV F V
Sbjct: 237 IANWQLWIPFQFLNFYFVPQKFQV 260
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 25.0 bits (52), Expect = 7.8
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 3 LNHEQVLRYFKMIYIFGTVCLMIATGMLVLGTLVDTYNL-VNFYVWYAFLYLSVYFVMAM 61
+N Q L YF +Y+ C + + +L LG D +N + + + S++++ +
Sbjct: 127 MNGTQHLVYFSGLYLTAIGCGGVRSALLPLG--ADQFNNDSSLDIQKRRNFFSLFYICVI 184
Query: 62 FSVGVNVITTGTI 74
F VIT+GTI
Sbjct: 185 F----GVITSGTI 193
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 14 MIYIFGTVCLMIATGMLVLGTLVDTYNLVNFYVWYAF-LYLSVYFVMAMFSVGVNVITT 71
++++F V IA G L G +D LV + +AF L++ V + +N + T
Sbjct: 29 LLFVFAGVGSAIAYGQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPVVT 87
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 29 MLVLGTLVDTYNLVNFYVWYAFLYLSVY 56
M+V+G V + L+ W F++L Y
Sbjct: 462 MVVIGRFVIKFFLLEIVAWVMFIFLETY 489
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.336 0.143 0.465
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,234
Number of Sequences: 37544
Number of extensions: 63673
Number of successful extensions: 356
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 14
length of query: 92
length of database: 14,793,348
effective HSP length: 70
effective length of query: 22
effective length of database: 12,165,268
effective search space: 267635896
effective search space used: 267635896
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 52 (25.0 bits)
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