GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002334-TA|BGIBMGA002334-PA|undefined
         (92 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   2.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   5.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 14 MIYIFGTVCLMIATGMLVLGTLV 36
          +++IF  V  +   G+L LG L+
Sbjct: 11 LLFIFNFVFAVCGLGILTLGVLI 33


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 48  YAFLYLSVYFVMAMFSVGVNVITTGTISK 76
           Y  LY      +A FSV   V+   T+ K
Sbjct: 252 YKILYFHAMSSIAEFSVSTEVLQDHTLEK 280


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)

Query: 42 VNFYVWYAFLYLSV 55
          ++F +W+  LY S+
Sbjct: 1  MSFNIWWLILYFSI 14


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.336    0.143    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,530
Number of Sequences: 429
Number of extensions: 791
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 92
length of database: 140,377
effective HSP length: 48
effective length of query: 44
effective length of database: 119,785
effective search space:  5270540
effective search space used:  5270540
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (21.2 bits)
S2: 38 (19.4 bits)