GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
         (251 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    30   0.28 
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    29   0.85 
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    29   0.85 
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.1  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   1.1  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.1  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    27   2.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.0  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   2.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   2.6  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    26   6.0  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   6.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.9  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   7.9  

>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 3   NQEENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKLIL 62
           NQE   EK  N+ N      E N   SA + S++++   P   ++   QT +  +   +L
Sbjct: 95  NQETKKEKQLNTANE---PHEANDQTSAQS-SKLIEAQLPTVEDRFAKQTNEVDINTHLL 150

Query: 63  NSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPN 111
           N +++KLK  ++  + ++      +  K N S +Q   ++     LHPN
Sbjct: 151 NFVEKKLKQERLAQNYSENGETNALNTK-NESTVQNIKNS-----LHPN 193


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 2   NNQEENVEKLTNSENFHIWKFEINIHVSASNLS--EVLKETKPEQREKPEFQTKDAKVKK 59
           N+ + + E+  N++   + +  ++ H +   LS  E+     P   ++P+F   D   KK
Sbjct: 161 NSHDSHYEQFANND---VTESAVDDHPATRKLSRDELYLPISPNNAQEPKFSVLDEWTKK 217

Query: 60  LILNSIDRKLKDYQVMPSKNK 80
           ++ N  +  ++D      +N+
Sbjct: 218 MVANFEEYSVEDVDKRRERNR 238


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 68  KLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKL 115
           ++ + + +PS  +   E+    KP +   +   STV +K   P+VK+L
Sbjct: 86  RVSNLKTVPSLKRENKEVNANSKPPVKQQEVIESTVISKSQSPSVKQL 133


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 34  SEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNI 93
           S++ K  K +QR+K +   KD  V +   +   +KL+    + SK+K   +    K+P +
Sbjct: 38  SKLTKLGKQKQRQKQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSK----KEPVV 93

Query: 94  SNMQKFGSTVYAKQLHPNVKKLDPRSKKLI 123
             + K G+    ++ H   K   P+ +KL+
Sbjct: 94  --VPKKGTPKIFQENHKVKKVKSPKKEKLV 121


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 72  YQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNNG 131
           +Q +PS NK   +    KK  +  + +   T  A   + N K LD   K   +   +   
Sbjct: 321 FQELPSLNKLSIQSRAFKKMRLPKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLEP 380

Query: 132 YRLWNDKERKIEISRDIVIVKSET 155
           Y L ++ +RK +   D  + KS+T
Sbjct: 381 YELDSNTQRKRKRYED-SLKKSKT 403


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 33   LSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNK 80
            L +V++ T  +  ++P F    A+  + +++SID  ++D  V+   N+
Sbjct: 1047 LKQVIQLTFEKATDEPNFSNMYARFARKMMDSIDDSIRDEGVLDKNNQ 1094


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 58  KKLILNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKK--- 114
           + L   S + KL+ Y    SKN    E+ + KK     ++        K+   N+K+   
Sbjct: 80  RALDYRSANEKLRPYSKYASKN---IELKLQKKEKEEELRNLEEEKAKKKKDANLKRKFL 136

Query: 115 --LDPRSKKLIMIGYTNNGYRLWNDKE 139
             LDP++++ + +  + +  R W ++E
Sbjct: 137 DTLDPKAREFLKLSSSISNSRSWENEE 163


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 34  SEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKT 81
           S VLK + PE + +    +K + ++    NS++   K    +PS NKT
Sbjct: 517 SVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKT 564


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 35  EVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKT 81
           ++LKE+K  +  +   + +  KV+K+I+N  D K      +P+ N++
Sbjct: 104 KMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRS 150


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 73  QVMPSKNKTPYEMWVGKKPNISNMQKFG-----STVYAKQLHPNVKKLDPRSKKL 122
           Q++ S+NK P +  + +KP +S+M K       +TV +  +H  ++ + P  +KL
Sbjct: 600 QLVSSQNKNPRKTAISRKPTLSSMFKSSLSQLMTTVSSTNVH-YIRCIKPNEEKL 653


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 6   ENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTK 53
           ++V+     ENF  WK +    +  +NL+E L E+         F T+
Sbjct: 109 DHVDLRLKEENFDFWKSQYRSDILINNLTETLFESIVPDTTNSPFSTE 156


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 1   MNNQEENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKL 60
           +N  E  +E    +EN      +  I+V + +  E L +   +  E P  Q  D    ++
Sbjct: 58  LNEMEVEMEDENENENDEQEAIQYYINVESQDADETLHQEAQDSSEDPFHQHFDYDDSEV 117

Query: 61  ILNSI 65
           I NSI
Sbjct: 118 IKNSI 122


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 32  NLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDY 72
           N+S V +    E+R + E   K  K++  +++ +  K KDY
Sbjct: 138 NISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDY 178


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 87  VGKKPNISNMQKFGSTVYAKQLHPNVKKL---DPRSKKLIMIGYTNNGYRLWNDKERKIE 143
           +G+   I   QK  S  + +Q+  ++ +L   DP ++ L++ GY N G   + +K  + +
Sbjct: 134 LGRMATIIKRQK-SSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQ 192

Query: 144 I 144
           +
Sbjct: 193 V 193


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 23  EINIHVSASNLSEVLKETKPEQREK-PEFQTKDAKVKKLILNSIDRKLKDYQVMP 76
           E+N +VS     + L ETK E+  K  E   KDA+ + +++    R  +  Q  P
Sbjct: 71  ELNRNVSFEKSDQNLAETKREEENKRTEVFKKDAEHEAVVVKRDFRPRRPEQTRP 125


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 13  NSENFHIWKFEINIHVSASNLSEVLKET 40
           +S+N+H+W + + I  + ++ S+ LK T
Sbjct: 141 DSKNYHVWSYRVWILQNFNDYSQELKLT 168


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 845,786
Number of Sequences: 5004
Number of extensions: 34294
Number of successful extensions: 102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 18
length of query: 251
length of database: 2,362,478
effective HSP length: 71
effective length of query: 180
effective length of database: 2,007,194
effective search space: 361294920
effective search space used: 361294920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)