Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
(251 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358 61 7e-10
05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390 55 5e-08
09_02_0336 - 7397745-7398308,7398813-7400723 55 6e-08
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 54 8e-08
06_03_0973 - 26454553-26454792,26454990-26455084,26455217-26455514 44 2e-04
05_03_0207 + 10103831-10104451 44 2e-04
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 35 0.055
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 33 0.29
05_06_0204 + 26354319-26356967 29 2.7
07_01_0318 + 2239382-2239452,2239573-2240218,2240321-2240386,224... 29 4.7
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 8.3
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 28 8.3
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 8.3
>07_01_1177 + 11125945-11126242,11126465-11128303,11128342-11128358
Length = 717
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 75 MPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTN--NGY 132
+P KTP E+W G + S ++ FG T YA H + KL+PR+ K + +GY + GY
Sbjct: 557 IPLNKKTPIEVWSGMPADYSQLRVFGCTAYA---HVDNGKLEPRAIKCLFLGYGSGVKGY 613
Query: 133 RLWNDKERKIEISRDIVIVKS 153
+LWN + K +SR +V +S
Sbjct: 614 KLWNPETNKTFMSRSVVFNES 634
>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
Length = 397
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 80 KTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRLWND 137
KT YE+ GKKPN+S FGS + P K P+ + ++GY +N YR++N
Sbjct: 171 KTSYELLSGKKPNVSYFHVFGSKCFILSKRPRSSKFSPKVDEGFLLGYESNAHAYRVFNK 230
Query: 138 KERKIEISRDIVIVKS 153
+E++RD+ +S
Sbjct: 231 TSGIVEVTRDVTFDES 246
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 75 MPSKN--KTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGY--TNN 130
+PSK+ KTPYE+W G+ P++++++ +GS AK + N+ KLDP++ I Y +
Sbjct: 374 VPSKSVPKTPYELWTGRVPSLTHLRVWGSPTEAKVFNSNIGKLDPKTVSCHFISYPERSK 433
Query: 131 GYRLW--NDKERKIEISRDIVIVKSE 154
GYR + N + +E +R V ++ E
Sbjct: 434 GYRFYYPNSYTKFVE-TRHAVFLEDE 458
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 58 KKLILNSIDRKLKDYQVMP-SKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLD 116
K + N +DRK+K +V +K+KTPYE+W+G+KP++S ++ +G +KL
Sbjct: 470 KAEVENQLDRKIKRLRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKRKLG 529
Query: 117 PRSKKLIMIGYTNN 130
P++ + +GY ++
Sbjct: 530 PKTVDCVFLGYAHH 543
>06_03_0973 -
26454553-26454792,26454990-26455084,26455217-26455514
Length = 210
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 8 VEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDR 67
VEK + NF +W+ + ++ +S+ L+ET PE+ + ++ A+ I S+
Sbjct: 11 VEKFDGTGNFVLWQMRLKNLLAQQGISKALQETMPEKMDSDKWNEMKAQAAATIRLSLSD 70
Query: 68 KLKDYQVMPSKNKTPYEMW 86
+ YQVM KTP E+W
Sbjct: 71 SVM-YQVM--DEKTPKEIW 86
>05_03_0207 + 10103831-10104451
Length = 206
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 4/49 (8%)
Query: 75 MPSKN--KTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKK 121
+PSK+ KT YE+W GK+P++S ++ +G VY K+L + KL P+S K
Sbjct: 160 VPSKSVDKTLYEIWTGKRPSLSFLKIWGCEVYVKRLQSD--KLTPKSDK 206
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 75 MPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYT--NNGY 132
M K TP+E W KK N+S ++ +G +KL P + + +GY + GY
Sbjct: 351 MKHKKVTPFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPNTVDCVFLGYAIHSVGY 410
Query: 133 R 133
R
Sbjct: 411 R 411
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 75 MPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYT--NNGY 132
M K T +E W KK N+S ++ +G +KL P++ + +GY + GY
Sbjct: 531 MKHKEVTQFEEWERKKLNLSYLRTWGCLAKVNVPIAKKRKLGPKTVDCVFLGYAIHSVGY 590
Query: 133 R 133
R
Sbjct: 591 R 591
>05_06_0204 + 26354319-26356967
Length = 882
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 93 ISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNNG 131
I + K G T Y K+L P V++ D L + GY +NG
Sbjct: 315 IKSAGKAGETQYIKKLVPAVRRHDASLYSLAISGYHSNG 353
>07_01_0318 +
2239382-2239452,2239573-2240218,2240321-2240386,
2240507-2240572,2240681-2241069,2242296-2242401
Length = 447
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 32 NLSEVLKETKPEQREKPEFQTKDAKVKKLI----LNSIDRKLKDYQ-VMPSKNKT 81
+LSEV ET+P +R + +T+ A+V L + I+ KL+ Q ++P NKT
Sbjct: 208 SLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINEKLRALQELVPHCNKT 262
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 23 EINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTP 82
E +HV+ + + K+TK + E+ E + ++ + ++ ++KL+ + + K K
Sbjct: 492 EERVHVACKEIITLEKQTKLLEEEEKEKREEEERRERRRTKEREKKLRRKERLKEKEKEK 551
Query: 83 YEMWVGKKPNI 93
++ V KP I
Sbjct: 552 EKIPVQLKPYI 562
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 63 NSIDRKLKDYQVMPSKNKTPYEMWVGKKPNI 93
NS D ++ + V+PS K Y W K P +
Sbjct: 193 NSPDARIVGFHVIPSSIKHEYSAWDDKNPTV 223
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 98 KFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNNGY 132
K G YA+QL + + D S ++ GY NNG+
Sbjct: 546 KCGRLQYARQLLDGMTRKDSISYSAMITGYMNNGH 580
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,509,044
Number of Sequences: 37544
Number of extensions: 159354
Number of successful extensions: 364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 13
length of query: 251
length of database: 14,793,348
effective HSP length: 80
effective length of query: 171
effective length of database: 11,789,828
effective search space: 2016060588
effective search space used: 2016060588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
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