Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
(251 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 5e-13
SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14) 48 7e-06
SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14) 48 7e-06
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0) 38 0.008
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4) 31 1.2
SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6) 31 1.2
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 30 1.6
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 29 2.8
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22) 29 4.8
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 28 6.4
SB_59222| Best HMM Match : Filament (HMM E-Value=0.95) 28 8.5
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 28 8.5
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6) 28 8.5
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 71.7 bits (168), Expect = 5e-13
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 78 KNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGY--TNNGYRLW 135
K TPYE W G+KPN+ +++ FG T YA KKLD ++KK I++GY GYRL+
Sbjct: 350 KYMTPYESWTGEKPNVEHLRTFGCTAYAHVPKDERKKLDSKAKKCILLGYGEETKGYRLY 409
Query: 136 NDKERKIEISRDIVI 150
+ ++R + SR++V+
Sbjct: 410 DPEKRLVFYSRNVVL 424
>SB_6317| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
Length = 813
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 80 KTPYEMWVGKKPNISNMQKFGSTVYA-KQLHPNVKKLDPRSKKLIMIGY 127
+TPY+ G+KPN+SNM+ FGS +A KQ+ KKLD R K + +GY
Sbjct: 194 QTPYQAMTGRKPNLSNMRVFGSECFAYKQMK---KKLDDRCTKGVFLGY 239
>SB_43674| Best HMM Match : RVT_2 (HMM E-Value=2.5e-14)
Length = 813
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 80 KTPYEMWVGKKPNISNMQKFGSTVYA-KQLHPNVKKLDPRSKKLIMIGY 127
+TPY+ G+KPN+SNM+ FGS +A KQ+ KKLD R K + +GY
Sbjct: 194 QTPYQAMTGRKPNLSNMRVFGSECFAYKQMK---KKLDDRCTKGVFLGY 239
>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 81 TPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRLWNDK 138
TPY M GKKP++S M FGS Y + N KKLD R + + +GY N Y +++
Sbjct: 475 TPYFMPTGKKPDLSRMGIFGSECYT--YNHNHKKLDSRGVRGVFVGYDKNSPAYLVYHPD 532
Query: 139 ERKIEISRDIVIVKSE 154
+ K+ R I + +
Sbjct: 533 KGKVLKHRLIKFISKD 548
>SB_17601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 111 NVKKLDPRSKKLIMIGY--TNNGYRLWNDKERKIEISRDIV 149
N KKLD ++KK I++GY YRL+ K+R++ SR++V
Sbjct: 2 NEKKLDSKAKKFILLGYGEETKRYRLYAPKKRRVFYSRNVV 42
>SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)
Length = 627
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 84 EMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIM 124
EM G+ PN+ +++ FG T YA KKLD ++KK I+
Sbjct: 180 EMVEGENPNVEHLRTFGCTAYAHVPKDERKKLDSKAKKCIL 220
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 36.7 bits (81), Expect = 0.018
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 79 NKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSK 120
N TP+E +KPN+S+++KFG Y KKLD +++
Sbjct: 395 NGTPFECLFKRKPNVSHLKKFGCVSYEYAPRCQRKKLDAKAR 436
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 15 ENFHIWKFEINIHVSASNLSEVLKETKP 42
ENF +W EIN++ S S +VLK+ P
Sbjct: 954 ENFKVWLIEINVNPSLSTSCQVLKDLMP 981
>SB_1693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 30 ASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTP 82
A +++V++E+K + + E TKD K KK ++ + K K+ + KNK P
Sbjct: 35 ARKMTKVMEESKKQAEDDGE--TKDKKRKKTHIDPLTEKKKNKKKNGEKNKEP 85
>SB_26379| Best HMM Match : HALZ (HMM E-Value=1.4)
Length = 421
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 30 ASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTP 82
A +++V++E+K + + E TKD K KK ++ + K K+ + KNK P
Sbjct: 35 ARKMTKVMEESKKQAEDDGE--TKDKKRKKTHIDPLTEKKKNKKKNGEKNKEP 85
>SB_20735| Best HMM Match : HALZ (HMM E-Value=4.6)
Length = 259
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 30 ASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTP 82
A +++V++E+K + + E TKD K KK ++ + K K+ + KNK P
Sbjct: 54 ARKMTKVMEESKKQAEDDGE--TKDKKRKKTHIDPLTEKKKNKKKNGEKNKEP 104
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 38 KETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKT 81
K KP++++K E + A+ ++ + RK K + PSKNKT
Sbjct: 120 KPGKPQEKDKQEQARQAARKRQARTSQASRKNKPSKNKPSKNKT 163
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 38 KETKPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQ 97
K TK ++KP + K A VKK K P+K TP + KKP
Sbjct: 562 KVTKKVAKKKPAAKPKKASVKKPAAKKAKSPKKKAAKKPAKKSTPKK---AKKPAAKKSP 618
Query: 98 KFGSTVYAKQLHPNVKKLDPRSKK 121
K S A + P P +KK
Sbjct: 619 KKLSKKPAAKKTPKKVAKKPAAKK 642
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/84 (22%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 4 QEENVEKLTNSENFHIWKFEI---NIHVSASNL--SEVLKETKPEQREKPEFQTKDAKVK 58
+E+N + L+ S+ + + E+ N ++ + + ++L E + ++E + Q K +KVK
Sbjct: 1157 REQNTDLLSRSQKMMVDELEVQKLNNSLTEAEIHKGKLLGEVESTRQEHQKMQEKYSKVK 1216
Query: 59 KLILNSIDRKLKDYQVMPSKNKTP 82
+L++ + +D+Q + S +P
Sbjct: 1217 DKLLSTKQKWREDHQKLESLLTSP 1240
>SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22)
Length = 227
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 55 AKVKKLILNSIDRKLKDYQVMPSKNKTPYEMWVG------KKPNISNMQK 98
AK K LI +S LK Y KN TPY + G ++ ++N QK
Sbjct: 77 AKQKVLIFSSYTSHLKIYTDWCDKNNTPYSLLTGSTKIADRESEVANFQK 126
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 19 IWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKLILNSIDR 67
+W+ + VS ++ +L+ T EQR K E +K++K KK + S DR
Sbjct: 6 VWEIFGIVLVSLYFVASLLRRTPGEQRTKQE-TSKESKDKKRLDKSCDR 53
>SB_59222| Best HMM Match : Filament (HMM E-Value=0.95)
Length = 411
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 2 NNQEENVEKLTNS---ENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVK 58
+++EE +E + +S E + N++ L L+E E+ + + +D K
Sbjct: 245 SSKEEAIETIQHSVQEEQLQDCSPDANLNEELETLRHKLEEVTAEKEAEKQQIREDLSKK 304
Query: 59 KLILNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTV 103
L R KD + K+K ++ + KK NI + +K G+TV
Sbjct: 305 YDEL----RFHKDSVIAKLKDKIREKIELNKKLNIEHKEKLGNTV 345
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 50 FQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTPYE 84
F++KDA V L +N+ + K + +V PSK+K E
Sbjct: 104 FESKDAVVFALKMNNAEFKGRKIRVFPSKDKPQTE 138
>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 41 KPEQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFG 100
+P + K V K N+ R K +P+ + + + V ++PNISN QK
Sbjct: 55 QPHRAAKVAVSGNGGPVLKNDENAFSRAGKSAFSIPNTAQQSFAIHVDQQPNISNSQKAT 114
Query: 101 S-TVYAKQLHPNVKKL 115
S T L+P V L
Sbjct: 115 SLTQQEPALNPAVTSL 130
>SB_2507| Best HMM Match : DUF1168 (HMM E-Value=1.6)
Length = 305
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 62 LNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKK 121
L S + D Q + ++ E + + PN S V+ K+L PN P ++
Sbjct: 86 LGSHSERSTDGQEIKDEHSAHSESIINENPNPDIQDSDFSVVHEKELPPN-----PHEQR 140
Query: 122 LIMIGYTNNGYRLWNDKERKIEISRD 147
+ + T Y NDKE E +D
Sbjct: 141 VKHVVDTTQAYHQDNDKEIDEENEQD 166
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 62 LNSIDRKLKDYQVMPSKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKK 121
L S + D Q + ++ E + + PN S V+ K+L PN P ++
Sbjct: 46 LGSHSERSTDGQEIKDEHSAHSESIINENPNPDIQDSDFSVVHEKELPPN-----PHEQR 100
Query: 122 LIMIGYTNNGYRLWNDKERKIEISRD 147
+ + T Y NDKE E +D
Sbjct: 101 VKHVVDTTQAYHQDNDKEIDEENEQD 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.310 0.128 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,694,684
Number of Sequences: 59808
Number of extensions: 217645
Number of successful extensions: 525
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 22
length of query: 251
length of database: 16,821,457
effective HSP length: 80
effective length of query: 171
effective length of database: 12,036,817
effective search space: 2058295707
effective search space used: 2058295707
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)
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