GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
         (251 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    65   2e-12
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     57   6e-10
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       50   9e-08
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       48   2e-07
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       48   2e-07
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.52 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.2  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          23   8.5  

>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 64.9 bits (151), Expect = 2e-12
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 77  SKNKTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRL 134
           S  KTP+E+W GK+P+ SN+  FG +           KLDP+ KKLI +GY +N   +R 
Sbjct: 221 SIEKTPFELWYGKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLIFVGYADNHKAFRF 280

Query: 135 WNDKERKIEISRDIVIVKSE 154
            +    KI +SRD   ++ E
Sbjct: 281 VDPTSNKITLSRDAKFIEME 300


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 56.8 bits (131), Expect = 6e-10
 Identities = 27/73 (36%), Positives = 49/73 (67%), Gaps = 6/73 (8%)

Query: 80  KTPYEMWVGKKPNISNMQKFGSTVYAKQLHPNV--KKLDPRSKKLIMIGYT--NNGYRLW 135
           +TP+E+W G+KP+++N++ F    Y   L P+V  KKLD +++++  +GY+  +  YR+ 
Sbjct: 489 RTPFEIWFGRKPDLTNLRLFXCVGYV--LIPSVKRKKLDVKAERMTFVGYSGEHKAYRML 546

Query: 136 NDKERKIEISRDI 148
           N +  +I ISRD+
Sbjct: 547 NTQTGEIRISRDV 559


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 49.6 bits (113), Expect = 9e-08
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 88  GKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRLWNDKERKIEIS 145
           GK+P+ SN+  FG +           KLDP+ KKLI +GY +N   +R  +    KI +S
Sbjct: 2   GKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLIFVGYADNHKAFRFVDPTSNKITLS 61

Query: 146 RDIVIVKSE 154
           RD   ++ E
Sbjct: 62  RDAKFIEME 70


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 88  GKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRLWNDKERKIEIS 145
           GK+P+ SN+  FG +           KLDP+ KKL+ +GY +N   +R  +    KI +S
Sbjct: 2   GKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLMFVGYADNHKAFRFVDPTSNKITLS 61

Query: 146 RDIVIVKSE 154
           RD   ++ E
Sbjct: 62  RDAKFIEME 70


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 88  GKKPNISNMQKFGSTVYAKQLHPNVKKLDPRSKKLIMIGYTNN--GYRLWNDKERKIEIS 145
           GK+P+ SN+  FG +           KLDP+ KKL+ +GY +N   +R  +    KI +S
Sbjct: 2   GKQPDYSNLHIFGCSAIVHVPAEKRSKLDPKGKKLMFVGYADNHKAFRFVDPTSNKITLS 61

Query: 146 RDIVIVKSE 154
           RD   ++ E
Sbjct: 62  RDAKFIEME 70


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 80  KTPYEMWVGKKPNISNMQKFGSTVYAKQLHP 110
           + PYE +VG  PN   MQ   S   A+   P
Sbjct: 477 RAPYEEYVGSNPNFEQMQVLVSRNKARPTFP 507


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 3   NQEENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKLI 61
           N++E  E     E+    K E+   ++A NL+ +  ETK    EK + QT+  ++K+ +
Sbjct: 423 NKKEIEESEAKIESLTRQKTEVEAKLTA-NLATLKDETKVLLEEKEKLQTELIELKRAV 480


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 66  DRKLKDYQVMPSKNKTPYE 84
           D  ++ YQ++P+ NK  YE
Sbjct: 309 DILVRCYQIIPNNNKATYE 327


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.310    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,929
Number of Sequences: 2123
Number of extensions: 5761
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 8
length of query: 251
length of database: 516,269
effective HSP length: 62
effective length of query: 189
effective length of database: 384,643
effective search space: 72697527
effective search space used: 72697527
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)