GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
         (251 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22555-1|CAA80277.1|  509|Homo sapiens CLA-1 protein.                  31   3.8  
AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein.     31   3.8  
BC064336-1|AAH64336.1|  399|Homo sapiens CCDC131 protein protein.      30   6.7  
AF515445-1|AAQ08185.1|  474|Homo sapiens scavenger receptor clas...    30   6.7  
BC112037-1|AAI12038.1|  509|Homo sapiens scavenger receptor clas...    30   8.9  
BC093732-1|AAH93732.1|  509|Homo sapiens scavenger receptor clas...    30   8.9  
BC080647-1|AAH80647.1|  509|Homo sapiens scavenger receptor clas...    30   8.9  
AB209436-1|BAD92673.1|  581|Homo sapiens Scavenger receptor clas...    30   8.9  

>Z22555-1|CAA80277.1|  509|Homo sapiens CLA-1 protein.
          Length = 509

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 11/85 (12%)

Query: 6   ENVEKLTNSENFHIWK-----FEINIHV-SASNLSEVLKETKPEQREKPEFQTKDAKVK- 58
           +NV    +S +F++WK     F ++++     N SE+LK  KP+ RE+  +  ++++ K 
Sbjct: 42  KNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGEKPQVRERGPYVYRESRHKS 101

Query: 59  KLILNSIDR----KLKDYQVMPSKN 79
            +  N+ D     + + +Q  PSK+
Sbjct: 102 NITFNNNDTVSFLEYRTFQFQPSKS 126


>AB011118-1|BAA25472.2| 1919|Homo sapiens KIAA0546 protein protein.
          Length = 1919

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 31/160 (19%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 1   MNNQEENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKL 60
           ++++EENV++   + NF       N+ ++  +  EV  E K + +    F+ K  + K  
Sbjct: 259 LSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFELKPLRQKLT 318

Query: 61  ILNSIDR--KLKDYQVMPSKNKTPYEMWVG---KKPNISNMQKFGSTVYAKQLHPNVKKL 115
           +    +R  K+KD     S      +   G   K+ N++        +  K+L  + ++L
Sbjct: 319 LPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEKKLGEDEEEL 378

Query: 116 DPRSKKLIMIGYTNNGYRLWNDKERKIEISRDIVIVKSET 155
                +L+ +    +  + W  KE+++       + K++T
Sbjct: 379 SELQLRLLAL---QSASKKWQQKEQQVMKESKEKLTKTKT 415


>BC064336-1|AAH64336.1|  399|Homo sapiens CCDC131 protein protein.
          Length = 399

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 1   MNNQEENVEKLTNSENFHIWKFEINIHVSASNLSEVLKETKPEQREKPEFQTKDAKVKKL 60
           ++++EENV++   + NF       N+ ++  +  EV  E K + +    F+ K  + K  
Sbjct: 250 LSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEVAPEEKTQVKTFQAFELKPLRQKLT 309

Query: 61  ILNSIDR--KLKDYQVMPSKNKTPYEMWVG---KKPNISNMQKFGSTVYAKQLHPNVKKL 115
           +    +R  K+KD     S      +   G   K+ N++        +  K+L  + ++L
Sbjct: 310 LPGDKNRLKKVKDGAKPLSLKSDTTDSSQGLQDKEQNLTRRISTSDILSEKKLGEDEEEL 369

Query: 116 DPRSKKLIMIGYTNNGYRLWNDKERKI 142
                +L+ +    +  + W  KE+++
Sbjct: 370 SELQLRLLAL---QSASKKWQQKEQQV 393


>AF515445-1|AAQ08185.1|  474|Homo sapiens scavenger receptor class
          B type III protein.
          Length = 474

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 7  NVEKLTNSENFHIWK-----FEINIH-VSASNLSEVLKETKPEQREKPEFQTKDAKVK-K 59
          NV    +S +F++WK     F ++++ +   N SE+LK  KP+ RE+  +  ++ + K  
Sbjct: 8  NVRIDPSSLSFNMWKEIPIPFYLSVYFLDVMNPSEILKGEKPQVRERGPYVYREFRHKSN 67

Query: 60 LILNSIDR----KLKDYQVMPSKN 79
          +  N+ D     + + +Q  PSK+
Sbjct: 68 ITFNNNDTVSFLEYRTFQFQPSKS 91


>BC112037-1|AAI12038.1|  509|Homo sapiens scavenger receptor class
           B, member 1 protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 6   ENVEKLTNSENFHIWK-----FEINIHV-SASNLSEVLKETKPEQREKPEFQTKDAKVK- 58
           +NV    +S +F++WK     F ++++     N SE+LK  KP+ RE+  +  ++ + K 
Sbjct: 42  KNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGEKPQVRERGPYVYREFRHKS 101

Query: 59  KLILNSIDR----KLKDYQVMPSKN 79
            +  N+ D     + + +Q  PSK+
Sbjct: 102 NITFNNNDTVSFLEYRTFQFQPSKS 126


>BC093732-1|AAH93732.1|  509|Homo sapiens scavenger receptor class
           B, member 1 protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 6   ENVEKLTNSENFHIWK-----FEINIHV-SASNLSEVLKETKPEQREKPEFQTKDAKVK- 58
           +NV    +S +F++WK     F ++++     N SE+LK  KP+ RE+  +  ++ + K 
Sbjct: 42  KNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGEKPQVRERGPYVYREFRHKS 101

Query: 59  KLILNSIDR----KLKDYQVMPSKN 79
            +  N+ D     + + +Q  PSK+
Sbjct: 102 NITFNNNDTVSFLEYRTFQFQPSKS 126


>BC080647-1|AAH80647.1|  509|Homo sapiens scavenger receptor class
           B, member 1 protein.
          Length = 509

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 6   ENVEKLTNSENFHIWK-----FEINIHV-SASNLSEVLKETKPEQREKPEFQTKDAKVK- 58
           +NV    +S +F++WK     F ++++     N SE+LK  KP+ RE+  +  ++ + K 
Sbjct: 42  KNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGEKPQVRERGPYVYREFRHKS 101

Query: 59  KLILNSIDR----KLKDYQVMPSKN 79
            +  N+ D     + + +Q  PSK+
Sbjct: 102 NITFNNNDTVSFLEYRTFQFQPSKS 126


>AB209436-1|BAD92673.1|  581|Homo sapiens Scavenger receptor class B
           member 1 variant protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 6   ENVEKLTNSENFHIWK-----FEINIHV-SASNLSEVLKETKPEQREKPEFQTKDAKVK- 58
           +NV    +S +F++WK     F ++++     N SE+LK  KP+ RE+  +  ++ + K 
Sbjct: 70  KNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGEKPQVRERGPYVYREFRHKS 129

Query: 59  KLILNSIDR----KLKDYQVMPSKN 79
            +  N+ D     + + +Q  PSK+
Sbjct: 130 NITFNNNDTVSFLEYRTFQFQPSKS 154


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.310    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,505,141
Number of Sequences: 224733
Number of extensions: 817613
Number of successful extensions: 1967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1967
Number of HSP's gapped (non-prelim): 8
length of query: 251
length of database: 73,234,838
effective HSP length: 88
effective length of query: 163
effective length of database: 53,458,334
effective search space: 8713708442
effective search space used: 8713708442
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 64 (29.9 bits)