GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002333-TA|BGIBMGA002333-PA|undefined
         (251 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.1  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 43  EQREKPEFQTKDAKVKKLILNSIDRKLKDYQVMPSKNKTPYEMWVG--KKPNISNMQKFG 100
           +Q+E    +  D KV  + L+ +   L  Y   PS     Y       K  N  N  ++ 
Sbjct: 238 DQQENLTLKEVDNKVYGMALSPVTHNL--YYNSPSSENLYYVNTESLMKSENQGNDVQYE 295

Query: 101 ST--VYAKQLHPNVKKLDPRSKKLIMIGYTNNGYRLWNDKERKIEISRDIVIVKSET 155
               V+  QL   VK +      +++ G  NN    WN+ +     + D+V    +T
Sbjct: 296 RVQDVFDSQL--TVKAVSKNG--VLLFGLANNTLSCWNEHQSLDRQNIDVVARNEDT 348


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,162
Number of Sequences: 429
Number of extensions: 2366
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 1
length of query: 251
length of database: 140,377
effective HSP length: 56
effective length of query: 195
effective length of database: 116,353
effective search space: 22688835
effective search space used: 22688835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)