GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002332-TA|BGIBMGA002332-PA|undefined
         (256 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    31   0.22 
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    29   0.50 
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    29   0.50 
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    26   6.2  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   8.2  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   8.2  

>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 188 VFVWVLFLNIVFAFFLVIAIC--FECVLYDDRCIFGEMDWLSSSALLVLII 236
           +FV+V+ ++IV  F LVI  C  +  V  DD  +   + W  +S  L+ I+
Sbjct: 108 LFVFVISISIVCIFDLVIFGCLQYNMVSMDDLHVMQRLSWFCASLALLFIL 158


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 137 LIFVIVLYPNKAFSHIGSLIR-----SGVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVW 191
           L+ ++ L  +     +GSL+R     +G+  +S  F L     LF + +N E +V +F  
Sbjct: 267 LLLIVSLGYSIVVPSLGSLLRKCQILAGLQFVSSCFFLSS---LFISPSNKESLVILFAA 323

Query: 192 VLFLNIVFAFFLVIAICFECVLYDDR 217
            +FL  +FA FL I +     + D R
Sbjct: 324 PVFLITLFAMFLWIVLALNNTIRDLR 349


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 129 MAGGVLLCLIF--VIVLYPNKAFSHIGSLIRSGVTTMSVFFMLMGVVLLFGTLTNSEGMV 186
           MAG +L CL+F   + L+    F +I  +   G  ++     LM    LF T T     V
Sbjct: 95  MAGPILFCLLFSTFLSLHGRSHFGYIYGIALLGSLSLHFVLRLMSAKNLFFTRT-----V 149

Query: 187 QVFVWVLFLNIVFAFF 202
            V  + L   +V AFF
Sbjct: 150 SVLGYSLLPLVVIAFF 165


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 152 IGSLIRSGVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFLNIVFAFFLVIAICFEC 211
           I S +  G+   +    + G  +L G +       +  + ++F  +V  + L+IAI F  
Sbjct: 50  IASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSA 109

Query: 212 VLYD 215
            + D
Sbjct: 110 KIND 113


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)

Query: 8   PTVISCCFCC---FLRAGTVMIAAFSFIVGLTFAPNVNQTSGFWDMENVL 54
           PTV  C F     F+   T+      F++GL    N+  T+G W   NVL
Sbjct: 271 PTVSFCVFLRDFDFVGIVTITTGVVLFLLGL----NIGSTTGHWAHANVL 316


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 195 LNIVFAFFLVIAICFECVLYDDRCIFGEMDWLSSSALLVLIITYLFRIYFISVANGY 251
           L +     L++     CVL   RC      W   +  ++  +  L +++  +V NG+
Sbjct: 137 LGVYLYSILILLFLSHCVL---RCCLSNWSWTHRAMFILHSMVILMKLHSYNVVNGW 190


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 207 ICFECVLYDDRCIF 220
           +CFEC  Y++ C++
Sbjct: 29  VCFECQKYNENCVY 42


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.335    0.145    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,570
Number of Sequences: 5004
Number of extensions: 33039
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 7
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 53 (25.4 bits)