GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002332-TA|BGIBMGA002332-PA|undefined
         (256 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    28   8.5  

>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 8/81 (9%)

Query: 121 FFIHNNCLMAGGVLLCLIFVIVLYPNKAFSH--IGSLIRSGVTTMSVFFMLMGVVLLFGT 178
           F +   C++ G +L+CL+       N A +H   G++++  V  +    M++ + L+   
Sbjct: 215 FVVFLGCMIVGIILMCLLSKRDEKGNNAPTHSSFGAMMKYIVAPLKDRRMILIIPLI--- 271

Query: 179 LTNSEGMVQVFVWVLFL-NIV 198
                G+ Q FVW +F  NIV
Sbjct: 272 --AYSGLQQAFVWAVFTKNIV 290


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.335    0.145    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,823,624
Number of Sequences: 37544
Number of extensions: 192021
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 1
length of query: 256
length of database: 14,793,348
effective HSP length: 80
effective length of query: 176
effective length of database: 11,789,828
effective search space: 2075009728
effective search space used: 2075009728
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 59 (27.9 bits)