GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002332-TA|BGIBMGA002332-PA|undefined
         (256 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 29   3.7  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 29   3.7  
SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)              29   4.9  
SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_19050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 10/61 (16%)

Query: 156 IRSGVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFL--NIVFAFFL-VIAICFECV 212
           +R  VT+ +V+F+L+GV+ LF         + ++ WVL++  +  FA+F+ V+ +CF   
Sbjct: 134 LRHRVTSSNVYFLLLGVLWLF------PAAIAIW-WVLWVEDHAAFAYFMTVVIVCFMLA 186

Query: 213 L 213
           L
Sbjct: 187 L 187


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 2   KFMDKLPTVISCCFCC 17
           KF +++ T++ CCFCC
Sbjct: 282 KFRNEVKTLLKCCFCC 297


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 2   KFMDKLPTVISCCFCC 17
           KF +++ T++ CCFCC
Sbjct: 282 KFRNEVKTLLKCCFCC 297


>SB_43713| Best HMM Match : Na_Ca_ex (HMM E-Value=7.9e-32)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 159 GVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFLNIVFAFFLVIAICFECVLYDDRC 218
           G    S  F ++ +V + G      G V    W       F + L +A     + YD   
Sbjct: 83  GTIVGSAVFNILFIVAICGMFA---GSVLTLSWWPLTRDSFCYMLSVA-ALVIITYDK-- 136

Query: 219 IFGEMDWLSSSALLVLIITYLFRIYFISVANGY 251
              E+ W    AL+++ + Y+  +YF S   G+
Sbjct: 137 ---EVHWYEGMALVLMYLLYVTIMYFNSTLEGF 166


>SB_27951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 175 LFGTLTNSEGMVQVFVWVLFLNIVFAFFLVIAICFECVLYDDRCIFGEMDWLSSSALLVL 234
           +  T+T    +  +F+   + +I+   ++   IC E    DD     ++  +  S   V 
Sbjct: 189 IIATVTTVGFLPLIFILFCYFHILKGLYVTNTICSEQSAIDDNLAKKKIAKMCLSVTAVF 248

Query: 235 IITYL-FRIYFISVA 248
            + Y+ + IYF+ +A
Sbjct: 249 FLCYIPYGIYFVFIA 263


>SB_53276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 8/34 (23%), Positives = 21/34 (61%)

Query: 181 NSEGMVQVFVWVLFLNIVFAFFLVIAICFECVLY 214
           ++E ++ VF+ +    ++   F++IAI   C+++
Sbjct: 241 SAEVIIMVFIIIRTFTVLITIFIIIAIIITCIIF 274


>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 186 VQVFVWVLFLNIVFAFFLVIAICFECVLYDDRCI-FGEMDWLSSSALL-VLIITYLFRIY 243
           V VFVWVL + IV  + LV+       L  D C+     DW   +  L V ++ Y   + 
Sbjct: 139 VVVFVWVLSIAIVLPYMLVLR------LRGDYCVEEWPADWYRKTFTLGVFVLLYFVPLV 192

Query: 244 FISVA 248
            +SV+
Sbjct: 193 IMSVS 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.335    0.145    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,531,300
Number of Sequences: 59808
Number of extensions: 209129
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 7
length of query: 256
length of database: 16,821,457
effective HSP length: 81
effective length of query: 175
effective length of database: 11,977,009
effective search space: 2095976575
effective search space used: 2095976575
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 59 (27.9 bits)