Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002332-TA|BGIBMGA002332-PA|undefined
(256 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 32 2.3
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 32 2.3
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 32 2.3
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 32 2.3
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 32 2.3
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 32 2.3
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 32 2.3
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 32 2.3
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 32 2.3
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 31 3.0
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 31 3.0
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 31 3.0
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 31 3.0
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 31 3.0
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 31 3.0
AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated pro... 30 9.2
AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated pro... 30 9.2
AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein. 30 9.2
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 158 SCCLCCHVRTGTILLGVWYLII 179
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 71 SCCLCCHVRTGTILLGVWYLII 92
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 105 SCCLCCHVRTGTILLGVWYLII 126
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 31.9 bits (69), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 12 SCCFCCFLRAGTVMIAAFSFIV 33
SCC CC +R GT+++ + I+
Sbjct: 14 SCCLCCHVRTGTILLGVWYLII 35
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 40 CCGCCHVRTGTIILGTWYMVVNLLMA 65
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 19 CCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 19 CCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 19 CCGCCHVRTGTIILGTWYMVVNLLMA 44
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 19 CCGCCHVRTGTIILGTWYMVVNLLMA 44
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 31.5 bits (68), Expect = 3.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 13 CCFCCFLRAGTVMIAAFSFIVGLTFA 38
CC CC +R GT+++ + +V L A
Sbjct: 19 CCGCCHVRTGTIILGTWYMVVNLLMA 44
>AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 29.9 bits (64), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 12 SCCFCCFLRAGTVMIAAF 29
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
>AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 29.9 bits (64), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 12 SCCFCCFLRAGTVMIAAF 29
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
>AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein.
Length = 124
Score = 29.9 bits (64), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 12 SCCFCCFLRAGTVMIAAF 29
SCC CC +R GT+++ +
Sbjct: 105 SCCLCCHVRTGTILLGVW 122
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.335 0.145 0.467
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,830,260
Number of Sequences: 224733
Number of extensions: 1111971
Number of successful extensions: 3147
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3129
Number of HSP's gapped (non-prelim): 18
length of query: 256
length of database: 73,234,838
effective HSP length: 88
effective length of query: 168
effective length of database: 53,458,334
effective search space: 8981000112
effective search space used: 8981000112
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 64 (29.9 bits)
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