Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002332-TA|BGIBMGA002332-PA|undefined
(256 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39995-5|AAF99994.4| 250|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z82058-1|CAB04862.2| 352|Caenorhabditis elegans Hypothetical pr... 33 0.15
U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical pr... 32 0.46
U39651-7|AAA80398.2| 494|Caenorhabditis elegans Hypothetical pr... 29 2.5
AC024828-2|AAU87812.1| 462|Caenorhabditis elegans Hypothetical ... 29 3.3
Z81475-9|CAL90887.1| 676|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81475-8|CAB03914.2| 653|Caenorhabditis elegans Hypothetical pr... 29 4.3
U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily ass... 29 4.3
Z81076-2|CAB03051.3| 333|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport... 28 7.5
AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine r... 28 7.5
Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U39995-5|AAF99994.4| 250|Caenorhabditis elegans Hypothetical
protein M60.6 protein.
Length = 250
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 133 VLLCLIFVIVL-YPNKAFSHIGSLIRSGVTTM-SVFFMLMGVVLLFGTLTNSEGMVQVFV 190
V L +I +++ + A + I ++ G+ + S +F+L+G+V + G+ + G+V ++
Sbjct: 51 VFLGIIMIVLSGLADYASTRINTIRLHGLEEICSFYFVLVGLVGICGSASYRRGLVITYL 110
Query: 191 WVLFLNIVFAFF--LVIAICFECVLYDDRCIFGEMDW 225
V+ ++ +F F ++ F+ Y C +GE DW
Sbjct: 111 -VMCIHSIFIFVPAIITVSSFDIHFYQHEC-WGECDW 145
>Z82058-1|CAB04862.2| 352|Caenorhabditis elegans Hypothetical
protein T27C5.1 protein.
Length = 352
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 124 HNNCLMAGGVLLCLIFVIVLYPNKAFSHIGSLIRSGVTTMSVFFMLMGVVLLFGTLT 180
H++C++ VL L + V +P AFS IG L GV T+ + +++ V +L TL+
Sbjct: 70 HSSCVIFDFVLCTLCTLYVFFPMYAFSFIGVLAWIGVPTL-LQIIIIFVAMLCATLS 125
>U42437-2|AAW88401.1| 294|Caenorhabditis elegans Hypothetical
protein F30B5.8 protein.
Length = 294
Score = 31.9 bits (69), Expect = 0.46
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 162 TMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFLNIVFAFFLVIAICFECVLYDDRCIFG 221
T S FFM+ ++L + N G+++ L +I AF VIAICF Y++R
Sbjct: 70 TFSRFFMIKNMMLFIIIMCNIFGVIRT---TLIFSI--AFLRVIAICFPVSYYNNR---S 121
Query: 222 EMDWLSSSALLVLIITY 238
++ S +L L+I +
Sbjct: 122 KIPLYGMSTILCLLIFF 138
>U39651-7|AAA80398.2| 494|Caenorhabditis elegans Hypothetical
protein ZK470.1 protein.
Length = 494
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 141 IVLYPNKAFSHIGSLIRSGVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFLNIVF- 199
I YP + I + IR G+T + + + +V N G++++ + VLFL +V
Sbjct: 242 IFAYPGVLNTDIFNFIRLGLTILGIICNISVLVANLVNGRNKHGILKIRLLVLFLILVMT 301
Query: 200 --AFFLVIAICFECV 212
+ + F+C+
Sbjct: 302 ITCILMTVIFVFDCL 316
>AC024828-2|AAU87812.1| 462|Caenorhabditis elegans Hypothetical
protein Y55F3BL.2 protein.
Length = 462
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 146 NKAFSHIGS--LIRSGVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFV 190
NK F + G + S + S+FF + GV LLF TL N +V + V
Sbjct: 80 NKKFKNTGKKPVFFSNFSNKSIFFAVWGVGLLFVTLINMCAVVGIGV 126
>Z81475-9|CAL90887.1| 676|Caenorhabditis elegans Hypothetical
protein C24H11.8b protein.
Length = 676
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 LIFVIVLYPNKAFSHIGSLIRSGVTTMSVFFMLMGVVLLFGTLTN-SEGMVQVFVWVLF 194
L++ I ++ + HI +G +++ + ++G+ L+ L N +E + QVF ++ F
Sbjct: 127 LLYSITVFTTIGYGHICPKTDTG-RLLTILYSILGIPLMLLCLANIAETLAQVFTYIYF 184
>Z81475-8|CAB03914.2| 653|Caenorhabditis elegans Hypothetical
protein C24H11.8a protein.
Length = 653
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 137 LIFVIVLYPNKAFSHIGSLIRSGVTTMSVFFMLMGVVLLFGTLTN-SEGMVQVFVWVLF 194
L++ I ++ + HI +G +++ + ++G+ L+ L N +E + QVF ++ F
Sbjct: 127 LLYSITVFTTIGYGHICPKTDTG-RLLTILYSILGIPLMLLCLANIAETLAQVFTYIYF 184
>U28740-4|AAA68319.2| 276|Caenorhabditis elegans Temporarily
assigned gene nameprotein 132 protein.
Length = 276
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 159 GVTTMSVFFMLMGVVLLFGTLTNSEGMVQVFVWVLFLNIVFAFFLVIAI 207
G+ + F + G+ + NS ++Q W++F N++ + L+IA+
Sbjct: 79 GIVGFQLLFTI-GICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIAL 126
>Z81076-2|CAB03051.3| 333|Caenorhabditis elegans Hypothetical
protein F35C5.2 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 191 WVLFLNIVFAFFLVIAICFECVLYDDRCIFGEMDWLSSSALLVLIITYLFRIY 243
W+L LNI++ FL I CF V Y R + S S ++L ++ F ++
Sbjct: 21 WILRLNIIYCTFLSIG-CFVGVAYCIR-FMRKHPIFSESTAILLYLSLAFAVF 71
>Z49969-3|CAA90267.1| 792|Caenorhabditis elegans Hypothetical
protein W01C9.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1 MKFMDKLPTVISCCFCCFLRAGTVMIAAFSFIVGLT-FAPNVNQTSGFWDMENVLSNFST 59
+K K P+++ CC C L ++I A I+ LT P+ + W L+N
Sbjct: 179 LKNFCKKPSIMGCCLCLLL----ILIIAIIIIIILTQVLPSPKNATFTWMAPQSLTNGQN 234
Query: 60 SS 61
SS
Sbjct: 235 SS 236
>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
family protein 4 protein.
Length = 1802
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 200 AFFLVIAICFECVLYDDRCI-----FGEMDWLSSSALL----VLIITYLFRIYFISVANG 250
A+F++ +CF+ + Y FG M L+ S LL L TY F+ +F S G
Sbjct: 1210 AWFVIRILCFDAIFYIFNITAYTHDFGVMLILTLSFLLYGWTALPFTYWFQFFFESAPKG 1269
Query: 251 YVM 253
++M
Sbjct: 1270 FMM 1272
>AF016681-18|AAO91734.1| 330|Caenorhabditis elegans Serpentine
receptor, class i protein57 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 197 IVFAFFLVIAICFECVLYDDRCIFGEMDWLSSSALLVLIITYLFRIYFISVANGY 251
+VF + +A C + ++ I G + + ALL++ + +Y SV Y
Sbjct: 96 VVFLYIYQVASMIVCFVRKNQSIAGTLTSFAIPALLIIFLVGFLAVYTFSVVGMY 150
>Z92826-1|CAB07320.1| 263|Caenorhabditis elegans Hypothetical
protein C18D11.1 protein.
Length = 263
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 4 MDKLPTVISCCFCCFLRAGTVMIAAFSFIVGL 35
M K+ I CFCC L T IA ++ I+ L
Sbjct: 1 MAKVEVQIRRCFCCGLSVATSAIAIYTLILYL 32
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.335 0.145 0.467
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,191,956
Number of Sequences: 27539
Number of extensions: 181690
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 14
length of query: 256
length of database: 12,573,161
effective HSP length: 80
effective length of query: 176
effective length of database: 10,370,041
effective search space: 1825127216
effective search space used: 1825127216
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.7 bits)
S2: 58 (27.5 bits)
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