GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002331-TA|BGIBMGA002331-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818     32   0.32 
03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071           31   0.56 
03_01_0048 - 409557-409825,409921-411004                               31   0.56 
10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127     31   0.74 
01_06_1053 - 34131814-34131954,34132043-34132201,34132337-341324...    29   2.3  
11_06_0567 - 25038537-25038957,25039059-25039252                       29   3.0  
08_02_0839 + 21693348-21694853                                         28   6.9  
10_08_0199 + 15721585-15722109,15722135-15722740,15723084-157232...    27   9.1  

>02_05_1261 + 35305909-35307042,35307779-35307968,35308550-35308818
          Length = 530

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 163 TWSSEGMADLGISFWLVVAAAIAAFVNDVCILIAT 197
           +W S+G  DL +   +V A A A F ND C ++ T
Sbjct: 93  SWRSQGGKDLLVRTCVVAALASALFTNDTCCVVLT 127


>03_01_0334 - 2634192-2634460,2634571-2634760,2634857-2636071
          Length = 557

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 163 TWSSEGMADLGISFWLVVAAAIAAFVNDVCILIAT 197
           +W S G  DL     +V A A A F ND C ++ T
Sbjct: 93  SWKSRGSKDLLFRVCIVSAIASALFTNDTCCVVLT 127


>03_01_0048 - 409557-409825,409921-411004
          Length = 450

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 164 WSSEGMADLGISFWLVVAAAIAAFVNDVCILIAT 197
           W S+G  DL     +V A A A F ND C ++ T
Sbjct: 73  WKSQGGRDLMCRVCVVTALASALFTNDTCCVVLT 106


>10_08_0831 + 20898186-20899178,20899307-20899496,20899853-20900127
          Length = 485

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 164 WSSEGMADLGISFWLVVAAAIAAFVNDVCILIAT 197
           W S+G  DL     +V A A A F ND C ++ T
Sbjct: 94  WRSQGGRDLMCRVCVVTALASALFTNDTCCVVLT 127


>01_06_1053 -
           34131814-34131954,34132043-34132201,34132337-34132423,
           34132508-34132623,34132717-34132843
          Length = 209

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 123 PLLVGNTLAVVFTLGAIAVWLTEYFLRLQHNVMSDADLAQTWSSEGM 169
           PL  GN + ++  LG    W++ Y  R+ +  M+ A   + +  + M
Sbjct: 116 PLQAGNAVQLIIVLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVM 162


>11_06_0567 - 25038537-25038957,25039059-25039252
          Length = 204

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 171 DLGISFWLVVAAAIAAFVNDVCILIATA---DGRDADTIAPALEEKVNGAIMLY 221
           D G   +LVVA++I AF+  + I +      DG  A  + P L+  V   ++LY
Sbjct: 60  DFGPFVYLVVASSIGAFMEAIAIFLTICKKKDGTPAKVLLPLLDAAV--PVLLY 111


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/83 (25%), Positives = 36/83 (43%)

Query: 113 SAARTRCSPKPLLVGNTLAVVFTLGAIAVWLTEYFLRLQHNVMSDADLAQTWSSEGMADL 172
           +A ++R SP  LL+   LAV+F +  +   L  + LR       DAD      +     L
Sbjct: 56  TAFQSRISPSILLIILILAVIFFVSGLLHLLVRFILRPAPRDAGDADSGDANVTAFQGQL 115

Query: 173 GISFWLVVAAAIAAFVNDVCILI 195
              F L  A    +F++ + + +
Sbjct: 116 QQLFHLHDAGVDQSFIDTLPVFL 138


>10_08_0199 +
           15721585-15722109,15722135-15722740,15723084-15723273,
           15723907-15724175
          Length = 529

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 163 TWSSEGMADLGISFWLVVAAAIAAFVNDVCILIAT 197
           +W S G  DL     +V A A A F ND   ++ T
Sbjct: 63  SWKSRGSKDLLFRVCVVSAVASALFTNDTTCVVLT 97


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,800,277
Number of Sequences: 37544
Number of extensions: 207759
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 8
length of query: 221
length of database: 14,793,348
effective HSP length: 79
effective length of query: 142
effective length of database: 11,827,372
effective search space: 1679486824
effective search space used: 1679486824
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)