GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002331-TA|BGIBMGA002331-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (221 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical p...    29   3.5  
U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    28   6.1  

>U64845-12|AAC48025.1|  475|Caenorhabditis elegans Hypothetical
           protein F45F2.1 protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 126 VGNTLAVVFTLGAIAVWLTEYFLRLQHNV 154
           +G T   +F++GAI +W  E FL    +V
Sbjct: 4   LGPTFKTIFSIGAIVLWSIELFLAFAQSV 32


>U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical
           protein F47E1.2 protein.
          Length = 744

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 10  MIFATFFGSCLCIALIV--GSLGT-THWVDARARKTSFPLKTDGRINFGLFEGHRELNVT 66
           MI A+ FG   C+  I   GS G    W+ A A   S         NF   +GH ++N T
Sbjct: 46  MISASDFGYIPCVVFIAHFGSKGNRARWIGAGAILVSITYLMLASPNFLFPQGHHDINTT 105


>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 127 GNTLAVVFTLGAIAVW-LTEYFLRLQHNVMSDADLAQTWSSEGMADLGISFWLVVAAAIA 185
           GN ++++FTL  +A+W L  YF      V        +W  + + D   +    +  A  
Sbjct: 60  GNGVSMIFTLIPVAIWLLNSYFTTFTKTV---GHSFFSWLHKILVDNIFASAASLRDAFF 116

Query: 186 AFVNDVCILIATADGRDADTIAPALEEK 213
           + +  V   I  AD  D   + P +E K
Sbjct: 117 SVITQVPCEILEADLSDDSHVTPFIERK 144


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.137    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,578,024
Number of Sequences: 27539
Number of extensions: 152576
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 3
length of query: 221
length of database: 12,573,161
effective HSP length: 79
effective length of query: 142
effective length of database: 10,397,580
effective search space: 1476456360
effective search space used: 1476456360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)