GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
         (229 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    26   0.28 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.28 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    26   0.28 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.6  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   3.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   3.5  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   3.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.0  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 140 AKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITK 180
           AKS  EP   T  V+  LE  P L+ +G    G+Y   + K
Sbjct: 14  AKSEKEP-SLTDLVQRWLERTPGLELEGFNFWGKYQKAVEK 53


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 140 AKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITK 180
           AKS  EP   T  V+  LE  P L+ +G    G+Y   + K
Sbjct: 174 AKSEKEP-SLTDLVQRWLERTPGLELEGFNFWGKYQKAVEK 213


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 140 AKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITK 180
           AKS  EP   T  V+  LE  P L+ +G    G+Y   + K
Sbjct: 174 AKSEKEP-SLTDLVQRWLERTPGLELEGFNFWGKYQKAVEK 213


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 168 LMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKL 200
           ++++G+Y     K  N    C  +C +  CEKL
Sbjct: 865 IVSLGEYKCVTCKCENGKPTCWRECDKATCEKL 897


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 131 VQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQY 174
           ++V  +G  A   +   ET+    H+LEN     +     I +Y
Sbjct: 144 IEVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKY 187


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 95  SPGLFMVETVDSEKLADNLNKQWLKY 120
           S GL+ ++ V + +L   L+  W KY
Sbjct: 322 SEGLYHLDEVYNNQLLTRLDDNWNKY 347


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 95  SPGLFMVETVDSEKLADNLNKQWLKY 120
           S GL+ ++ V + +L   L+  W KY
Sbjct: 322 SEGLYHLDEVYNNQLLTRLDDNWNKY 347


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 95  SPGLFMVETVDSEKLADNLNKQWLKY 120
           S GL+ ++ V + +L   L+  W KY
Sbjct: 322 SEGLYHLDEVYNNQLLTRLDDNWNKY 347


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 102 ETVDSEKLADNLNKQWLKYRKEKERLRV 129
           E  +S  L++   K W + R+ KER +V
Sbjct: 188 ELANSLGLSERQVKIWFQNRRAKERKQV 215


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,955
Number of Sequences: 317
Number of extensions: 2242
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 229
length of database: 114,650
effective HSP length: 55
effective length of query: 174
effective length of database: 97,215
effective search space: 16915410
effective search space used: 16915410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)