GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
         (229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...   135   6e-33
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    31   0.19 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    29   0.43 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    28   1.00 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   7.0  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   7.0  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   7.0  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.0  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    25   9.3  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   9.3  

>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score =  135 bits (326), Expect = 6e-33
 Identities = 78/195 (40%), Positives = 114/195 (58%), Gaps = 12/195 (6%)

Query: 29  LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 88
           LVAVSK  PVE ++EAYNAGQRHFGENY+ E   K    L+ +   D++WHFIG LQ++K
Sbjct: 26  LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80

Query: 89  INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 148
             K+     L+ +ET+D+EK A  +N         +  L V +QVNTSGE+ K G+ P +
Sbjct: 81  CKKIASVKNLYSIETIDTEKKARLVNS---AREALQLPLNVYIQVNTSGEENKGGVTPSK 137

Query: 149 TTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDVE 208
             +  + + ++   L  +GLMTIG          NPD+  L   R+ +  +L + +   +
Sbjct: 138 VLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIPL---Q 193

Query: 209 LSMGMSSDFAHAVSF 223
           LSMGMSSD+  A+ +
Sbjct: 194 LSMGMSSDYLLAIKY 208


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 15  VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 65
           +++   D+P+ AP  VAV++ +P EL     N  QR   E Y  E   K++
Sbjct: 374 ISKTFDDVPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 108 KLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQG 167
           + A  +  +  K  K+   L   + ++  GE+     + +  TK VEHIL   P  D QG
Sbjct: 337 RAAKRVTSKLEKVSKQNPTLVYPIAIHLLGERGSLNFDRVTNTKLVEHIL---PLADEQG 393

Query: 168 LMTIGQ 173
           ++ + Q
Sbjct: 394 ILQLFQ 399


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 112 NLNKQWLK--YRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQG 167
           N+  Q LK  +R+    +R  +Q+N  G     G+  + + K   H ++   N DF G
Sbjct: 193 NVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMG 250


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 35   IKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLG 94
            +KP+E I EA   G+    E   +E +D  ++ ++    +   +          + +L G
Sbjct: 1362 LKPLEDIDEAPIEGRAQ--EALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKG 1419

Query: 95   SPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVE 154
            S     VE V+ ++  D   K        KER +++ + NT     +  L+ L+T K   
Sbjct: 1420 SN---KVEDVNMDEEEDEGFKSDESVSDFKER-KLLEKQNTVSISERRELQ-LKTAK--- 1471

Query: 155  HILENCPNLDF 165
             IL NC +LDF
Sbjct: 1472 EILSNCKHLDF 1482


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 154 EHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEK 199
           +H+LE      F GL+T GQ D  IT+  N D + L +  + V ++
Sbjct: 32  KHLLELNSESTFLGLLTKGQADTSITR-LNQDDVRLFEKAKTVADR 76


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 50  RHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSP 96
           RH  +  +N L+ +   P    KC +     +GH++TNKI  L G P
Sbjct: 926 RHAAKEGIN-LNGEGRKPTT-RKCSNCGQ--VGHMKTNKICPLFGRP 968


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 74  KDIKWHFIGHLQTNKINKLLG 94
           +++KW +   LQ+ K+N LLG
Sbjct: 950 EEVKWKYWNRLQSVKLNGLLG 970


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 90  NKLLGSPGLFMVETV-DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSG 143
           NK++      +V+ + D+  +     K  L++ K+K++L V+   NT G  A SG
Sbjct: 113 NKIIQEAERMLVKDLEDNHNIGTAGRKFLLQHYKDKDKLTVLTHCNT-GSLATSG 166


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 117 WLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCP-NLDFQGLMTIGQYD 175
           WL Y +  +R RV ++V  S E  +     ++  + ++ I E    +L  + ++++   D
Sbjct: 96  WLAYDRAAKR-RVALKVVRSAEHYRE--TSIDEIRILQKIREGDEKHLGKKHIISL--LD 150

Query: 176 YDITKGPNPDYLCLI 190
           Y + +GPN  ++C++
Sbjct: 151 YFVHRGPNGAHVCMV 165


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,414
Number of Sequences: 5004
Number of extensions: 44007
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 10
length of query: 229
length of database: 2,362,478
effective HSP length: 70
effective length of query: 159
effective length of database: 2,012,198
effective search space: 319939482
effective search space used: 319939482
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)