Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
(229 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0186 - 41857468-41857759,41857856-41857977,41858148-418582... 176 1e-44
05_01_0357 - 2802437-2802511,2802594-2802692,2803215-2803280,280... 100 1e-21
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 32 0.44
06_01_0273 + 2022479-2022592,2022830-2022973,2023524-2023601,202... 31 1.0
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 30 1.8
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 29 2.4
02_04_0127 + 19992651-19993334,19993853-19993885,19994060-199941... 29 2.4
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 29 3.1
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 28 5.5
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 28 5.5
08_02_0312 + 15650594-15650652,15650725-15650811,15651016-156511... 28 5.5
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 28 5.5
03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887... 28 5.5
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280... 28 7.2
06_03_0655 + 23176075-23176470,23176573-23176710,23177506-231775... 28 7.2
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 28 7.2
>01_07_0186 -
41857468-41857759,41857856-41857977,41858148-41858269,
41858439-41858547,41860076-41860174,41860251-41860384,
41860645-41860732,41860913-41860959,41861626-41861692,
41861783-41862004
Length = 433
Score = 176 bits (428), Expect = 1e-44
Identities = 97/220 (44%), Positives = 138/220 (62%), Gaps = 13/220 (5%)
Query: 4 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 63
L+ VL + A R + + R+VAV K KPV ++ E Y+AG R FGENYV E K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAV--RVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTK 71
Query: 64 ASDPLILEKCKDIKWHFIGHLQTNKINKLLGS-PGLFMVETVDSEKLADNLNKQWLKYRK 122
A P + E DI+WHFIGHLQ+NK+ LL + P L MVE VD+ K+A++L++ +
Sbjct: 72 A--PQLPE---DIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGR 126
Query: 123 EKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGP 182
+ L+V+VQVNTSGE++KSG++P + +H+ CP+L F GLMTIG DY T
Sbjct: 127 DP--LKVLVQVNTSGEESKSGIDPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTP-- 182
Query: 183 NPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAVS 222
++ L+ C+ EVC+ +++ + ELSMGMS DF AV+
Sbjct: 183 -ENFKALVNCKLEVCKAIDMPAEQFELSMGMSGDFEQAVA 221
>05_01_0357 -
2802437-2802511,2802594-2802692,2803215-2803280,
2803619-2803665,2804067-2804133,2805062-2805283
Length = 191
Score = 100 bits (239), Expect = 1e-21
Identities = 62/139 (44%), Positives = 87/139 (62%), Gaps = 8/139 (5%)
Query: 4 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 63
L++VLS+ + A AR + P+ + R+VAVSK KPV +I Y+AG R FGENYV EL DK
Sbjct: 14 LRSVLSRAQQAAARSGR-APE-SVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDK 71
Query: 64 ASDPLILEKCKDIKWHFIGHLQTNKINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRK 122
AS + +DI+WHFIG+LQ+NK LL G P L MVE+VD +K+A+ L++ +
Sbjct: 72 AS-----QLPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGR 126
Query: 123 EKERLRVMVQVNTSGEQAK 141
+ ++ V N E K
Sbjct: 127 KPLKVLVQALANCRKEVCK 145
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 189 LIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAV 221
L CR+EVC++L + + ELSMGMS+DF A+
Sbjct: 136 LANCRKEVCKELGIPEEQCELSMGMSADFEQAI 168
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 5 KTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKA 64
+T+ +++ + + + + Q+ RLVA+ K + ++ Q + N VNE
Sbjct: 210 ETIDKELQHQITKEKECIRQVLFRLVAIIKFLGKRSLAFRGSSDQLY---NDVNEFDLVM 266
Query: 65 SDPLILEKCKDIKWHFIGHLQTNKINKLLGS 95
D L + K++++H++ H N+++ L+ S
Sbjct: 267 QDHLRHIQNKELQYHYLSHKIQNELSSLMAS 297
>06_01_0273 +
2022479-2022592,2022830-2022973,2023524-2023601,
2025361-2025585,2025684-2025782,2026177-2026235,
2026351-2026501,2026590-2026754
Length = 344
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 108 KLADNLNKQWLKYRKEKERLRVMV----QVNTSGEQAKSG-----LEPLETTKAVEHILE 158
KLA + + + ++ K+ E LR MV + T+ E+ K G L P E TKA+E + +
Sbjct: 212 KLAKDTDNELIEINKQLEELRQMVVQKCRKMTTYEKRKLGAGLCHLSPEELTKALEMVAQ 271
Query: 159 NCPNLDFQG 167
+ P+ + +G
Sbjct: 272 DNPSFEAKG 280
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 147 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPN-PDYLCLIKCRQEVCEKLNLD 203
+E K NC F+G T Y+ P DY KCRQ+V + LNLD
Sbjct: 286 VEILKRKNGPFSNCMLRGFKGKFTYNGEQYEAMAAPQGADYH---KCRQDVVKALNLD 340
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 147 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPN-PDYLCLIKCRQEVCEKLNLD 203
+E K NC F G YD T P DY KCR +V + LNLD
Sbjct: 262 VEILKRKNGTFSNCMLRGFSGKYIYNGEQYDATAAPQGADYH---KCRDDVVKALNLD 316
>02_04_0127 +
19992651-19993334,19993853-19993885,19994060-19994128,
19994494-19994581,19994627-19995132,19995210-19995503,
19995557-19995906,19996020-19996456,19996718-19996743,
19996995-19997078
Length = 856
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 60 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 108
+S + +D ILE+ + + W+ G+ T+K N ++G +E + EK
Sbjct: 478 ISSREADIAILEEPEHLNWYHHGNRWTDKFNHVVGVVHTNYLEYIKREK 526
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 105 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILEN 159
D +K+ NK WL+ + LRVM A G E ET K +E+ L N
Sbjct: 626 DCDKVMIENNKLWLEVERLMMELRVMAHKKEVAANA-FGAEKAETMKELENHLMN 679
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 76 IKWHFIGHLQTNKI---NKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKE-----KERL 127
+KW + +Q + +L P L + LA NL K LKYR E KERL
Sbjct: 48 VKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERL 107
Query: 128 RVMVQVNTSGEQAKSGLEPLETTKAVEHI 156
Q G+ ++ +P+ + H+
Sbjct: 108 LKRAQAEAEGKTVEA-KKPIVVKYGLNHV 135
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 172 GQYDYDITKGPNPDYLC 188
G+YD TK PNPD LC
Sbjct: 527 GRYDSICTKPPNPDVLC 543
>08_02_0312 +
15650594-15650652,15650725-15650811,15651016-15651142,
15651533-15651712,15652071-15652231,15652338-15652450,
15652648-15652722,15652823-15652936,15653177-15653244,
15653336-15653419,15653545-15653598,15653844-15653937,
15654093-15654166,15654248-15654358,15654443-15654487,
15654572-15654628,15654711-15654815,15654889-15655005,
15655301-15655404,15655876-15656041,15656149-15656286
Length = 710
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 144 LEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVC---EKL 200
++ + +TK V + C NL+ GL+ IG + + L C+ +V L
Sbjct: 277 IDQIRSTKQVNAAMTTCNNLNLDGLVIIGGVTSNSDAAQLAEALVQNNCKTKVVGVPVSL 336
Query: 201 NLDIKD--VELSMGMSS 215
N D+K+ VE ++G +
Sbjct: 337 NGDLKNQFVETTVGFDT 353
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 76 IKWHFIGHLQTNKI---NKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKE-----KERL 127
+KW + +Q + +L P L + LA NL K LKYR E KERL
Sbjct: 32 VKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERL 91
Query: 128 RVMVQVNTSGEQAKSGLEPLETTKAVEHI 156
Q G+ ++ +P+ + H+
Sbjct: 92 LKRAQAEAEGKTVEA-KKPIVVKYGLNHV 119
>03_02_0494 -
8873285-8873777,8873926-8874275,8874842-8875108,
8875616-8875897
Length = 463
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 60 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 108
+SD +D +LE+ + + W+ G NK K++G +E V E+
Sbjct: 112 VSDDKADIAVLEEPEHLTWYHHGRRWKNKFRKVIGVVHTNYLEYVKRER 160
>11_01_0368 +
2800597-2801037,2802282-2802314,2802789-2802876,
2802984-2803465,2803552-2803818,2803955-2804304,
2804396-2804945
Length = 736
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 60 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 108
+ K +D ILE+ + + W+ G T+K N ++G +E + EK
Sbjct: 366 IPSKEADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREK 414
>06_03_0655 +
23176075-23176470,23176573-23176710,23177506-23177574,
23177652-23177723,23177973-23178055,23178135-23178266,
23178407-23178617,23179233-23179262
Length = 376
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 118 LKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNL 163
L R + RL V + E+ K GL E + E + E+ P+L
Sbjct: 35 LSSRGRRPRLAVQAVAPAAAEEEKGGLPAAEAERLAEFLREDLPHL 80
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 107 EKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 148
+ L D L +KYRKEKER+ + ++ E+ + L+ E
Sbjct: 452 DDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAE 493
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,379,132
Number of Sequences: 37544
Number of extensions: 250810
Number of successful extensions: 581
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 17
length of query: 229
length of database: 14,793,348
effective HSP length: 80
effective length of query: 149
effective length of database: 11,789,828
effective search space: 1756684372
effective search space used: 1756684372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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