GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
         (229 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    30   0.050
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           28   0.26 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   1.4  
AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismuta...    25   2.5  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.5  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    23   9.9  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 30.3 bits (65), Expect = 0.050
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 102 ETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCP 161
           ETVD  +  D + K   ++ K    +R  +  N+S   A SGL   +    +    +N  
Sbjct: 64  ETVDDSEAFDIMQKDRREFNKRSHEVRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHL 123

Query: 162 NLDFQGLMTIGQYDYDITK 180
            L     + +  +D +ITK
Sbjct: 124 RLP---KVDLPSFDGEITK 139


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 1   MYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVE 39
           +YGL+ + + IE    +  KDLP +    VA +KI  +E
Sbjct: 513 LYGLRLISNNIENFTRKAFKDLPSLQILNVARNKISYIE 551


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 8   LSQIEIAVARRSKDLPQIAPRLVAVSK 34
           L +++I +A + K+L Q+ PR  A+ +
Sbjct: 330 LERLKITIAEKEKELEQVRPRYEAMRR 356


>AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismutase
           1 protein.
          Length = 206

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 117 WLKYRKEKERLRVMVQVNTSGEQAKSGLEPL 147
           WL Y K+ + L++    N    +A +GL PL
Sbjct: 156 WLGYNKKTKLLQIAACPNQDPLEATTGLVPL 186


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 173  QYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFA 218
            Q + DI   PN      I+ R E  EK+N +++++  ++     FA
Sbjct: 1013 QIEQDIRDQPNAPEEEKIRYRNESYEKINSELQELYRNITSQIPFA 1058


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 173  QYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFA 218
            Q + DI   PN      I+ R E  EK+N +++++  ++     FA
Sbjct: 1014 QIEQDIRDQPNAPEEEKIRYRNESYEKINSELQELYRNITSQIPFA 1059


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 2   YGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELS 61
           Y L+ +L   +      S  +  I P LV V +  PV LI    N  + +  +  V E  
Sbjct: 86  YALRLLLETQKSEDVESSIPVSTIEPNLVEVYEPPPVVLIDTGNNVVEVNTDDQIVLEDG 145

Query: 62  DKASDPLILEKCKDIKWHFIGHLQ 85
               +    E+ +   +H  G LQ
Sbjct: 146 SVEGESNEQEEAQIDVYHVDGQLQ 169


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,286
Number of Sequences: 2123
Number of extensions: 9353
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 229
length of database: 516,269
effective HSP length: 62
effective length of query: 167
effective length of database: 384,643
effective search space: 64235381
effective search space used: 64235381
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)