GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
         (229 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003497-1|AAO39501.1|  254|Drosophila melanogaster RE46560p pro...   227   1e-59
AE014297-4555|AAF57017.2|  254|Drosophila melanogaster CG1983-PA...   227   1e-59
BT003582-1|AAO39586.1|  760|Drosophila melanogaster LD18312p pro...    33   0.33 
AF132164-1|AAD34752.1|  969|Drosophila melanogaster unknown prot...    33   0.33 
AE014296-3650|AAG22184.1|  767|Drosophila melanogaster CG7139-PB...    33   0.33 
AE014296-3649|AAF51804.1|  969|Drosophila melanogaster CG7139-PA...    33   0.33 

>BT003497-1|AAO39501.1|  254|Drosophila melanogaster RE46560p
           protein.
          Length = 254

 Score =  227 bits (555), Expect = 1e-59
 Identities = 106/220 (48%), Positives = 150/220 (68%), Gaps = 1/220 (0%)

Query: 3   GLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSD 62
           GL+ VL +I+  + +R K++    P LVAVSK KP E ++EAY  GQR FGENYV EL +
Sbjct: 14  GLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAEAVIEAYEGGQRDFGENYVQELEE 73

Query: 63  KASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYR- 121
           K+  P IL KC DI+WHFIGH+Q+NKINK+L  P L M++TVDSEKLA  L+  W K + 
Sbjct: 74  KSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAAWSKRQP 133

Query: 122 KEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKG 181
             +E L+V++Q+NTSGE  KSG+E  +     ++I  N  +L+  G+MTIG + +D + G
Sbjct: 134 TPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNG 193

Query: 182 PNPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAV 221
           PNPD++ L++  + +CE  +L    V +SMGMS+DF  A+
Sbjct: 194 PNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAI 233


>AE014297-4555|AAF57017.2|  254|Drosophila melanogaster CG1983-PA
           protein.
          Length = 254

 Score =  227 bits (555), Expect = 1e-59
 Identities = 106/220 (48%), Positives = 150/220 (68%), Gaps = 1/220 (0%)

Query: 3   GLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSD 62
           GL+ VL +I+  + +R K++    P LVAVSK KP E ++EAY  GQR FGENYV EL +
Sbjct: 14  GLQHVLKRIDEVLLQRPKEVQAARPLLVAVSKTKPAEAVIEAYEGGQRDFGENYVQELEE 73

Query: 63  KASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYR- 121
           K+  P IL KC DI+WHFIGH+Q+NKINK+L  P L M++TVDSEKLA  L+  W K + 
Sbjct: 74  KSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAAWSKRQP 133

Query: 122 KEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKG 181
             +E L+V++Q+NTSGE  KSG+E  +     ++I  N  +L+  G+MTIG + +D + G
Sbjct: 134 TPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFGFDYSNG 193

Query: 182 PNPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAV 221
           PNPD++ L++  + +CE  +L    V +SMGMS+DF  A+
Sbjct: 194 PNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAI 233


>BT003582-1|AAO39586.1|  760|Drosophila melanogaster LD18312p
           protein.
          Length = 760

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 7   VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVEL-IVEAYNA--GQRHFGENYVNELSDK 63
           V S++ I    R ++  ++ P     S  KP+E+  ++  N   G  H  + Y N+    
Sbjct: 138 VKSELSIIDLLREENQIKVVPSKAESSGAKPLEMHSLDCPNEPKGFAHLRQMYPNKQLAG 197

Query: 64  ASDPLILEKCK-DIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLA 110
             D  +  KC+ D+ W     L+ +++N   GS  +   ET+DSE+ A
Sbjct: 198 LWDLFV--KCQADVDWAVDILLKEDELNAATGSDQIGFEETIDSEEAA 243


>AF132164-1|AAD34752.1|  969|Drosophila melanogaster unknown
           protein.
          Length = 969

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 7   VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVEL-IVEAYNA--GQRHFGENYVNELSDK 63
           V S++ I    R ++  ++ P     S  KP+E+  ++  N   G  H  + Y N+    
Sbjct: 347 VKSELSIIDLLREENQIKVVPSKAESSGAKPLEMHSLDCPNEPKGFAHLRQMYPNKQLAG 406

Query: 64  ASDPLILEKCK-DIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLA 110
             D  +  KC+ D+ W     L+ +++N   GS  +   ET+DSE+ A
Sbjct: 407 LWDLFV--KCQADVDWAVDILLKEDELNAATGSDQIGFEETIDSEEAA 452


>AE014296-3650|AAG22184.1|  767|Drosophila melanogaster CG7139-PB,
           isoform B protein.
          Length = 767

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 7   VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVEL-IVEAYNA--GQRHFGENYVNELSDK 63
           V S++ I    R ++  ++ P     S  KP+E+  ++  N   G  H  + Y N+    
Sbjct: 145 VKSELSIIDLLREENQIKVVPSKAESSGAKPLEMHSLDCPNEPKGFAHLRQMYPNKQLAG 204

Query: 64  ASDPLILEKCK-DIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLA 110
             D  +  KC+ D+ W     L+ +++N   GS  +   ET+DSE+ A
Sbjct: 205 LWDLFV--KCQADVDWAVDILLKEDELNAATGSDQIGFEETIDSEEAA 250


>AE014296-3649|AAF51804.1|  969|Drosophila melanogaster CG7139-PA,
           isoform A protein.
          Length = 969

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 7   VLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVEL-IVEAYNA--GQRHFGENYVNELSDK 63
           V S++ I    R ++  ++ P     S  KP+E+  ++  N   G  H  + Y N+    
Sbjct: 347 VKSELSIIDLLREENQIKVVPSKAESSGAKPLEMHSLDCPNEPKGFAHLRQMYPNKQLAG 406

Query: 64  ASDPLILEKCK-DIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLA 110
             D  +  KC+ D+ W     L+ +++N   GS  +   ET+DSE+ A
Sbjct: 407 LWDLFV--KCQADVDWAVDILLKEDELNAATGSDQIGFEETIDSEEAA 452


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,071,933
Number of Sequences: 52641
Number of extensions: 454239
Number of successful extensions: 1045
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 6
length of query: 229
length of database: 24,830,863
effective HSP length: 82
effective length of query: 147
effective length of database: 20,514,301
effective search space: 3015602247
effective search space used: 3015602247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)