Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002330-TA|BGIBMGA002330-PA|IPR011078|Protein of unknown
function UPF0001
(229 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37429-4|AAA79348.1| 244|Caenorhabditis elegans Hypothetical pr... 196 1e-50
U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protea... 33 0.13
U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protea... 33 0.13
AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical... 30 1.2
Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical pr... 29 2.1
U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical p... 27 8.5
U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical p... 27 8.5
AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein. 27 8.5
>U37429-4|AAA79348.1| 244|Caenorhabditis elegans Hypothetical
protein F09E5.8 protein.
Length = 244
Score = 196 bits (478), Expect = 1e-50
Identities = 99/194 (51%), Positives = 122/194 (62%), Gaps = 2/194 (1%)
Query: 28 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 87
RLVAVSK K +LI Y+ QRHFGENYV EL +K+ ++ KC DI+WHFIG +Q+N
Sbjct: 31 RLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSD--VLASKCLDIRWHFIGQVQSN 88
Query: 88 KINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPL 147
KI K+ SPGL+ VETV++EK A +K+W K+ LRV+VQVNTSGE K G+E
Sbjct: 89 KIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGEDNKGGIEIG 148
Query: 148 ETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDV 207
E K E I + C NL F G MTIG +D G NPD+ L K RQ E+ V
Sbjct: 149 EAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSV 208
Query: 208 ELSMGMSSDFAHAV 221
ELSMGMS DF A+
Sbjct: 209 ELSMGMSDDFLQAI 222
>U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protease
protein 2, isoformb protein.
Length = 429
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 116 QWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYD 175
+W++YRK++E R M+ ++ + E V +I P F+ ++ G +
Sbjct: 38 RWVQYRKDREIRRFMMNKQSNDMSVGQYVNDYEDEAYVGNITIGTPQQQFKVILDTGSSN 97
Query: 176 Y---DITKGPNPDYLCLI-KCRQEVCE 198
DIT G P+ + CR +C+
Sbjct: 98 LWIPDITCGTKPENCSTVPACRGIICQ 124
>U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protease
protein 2, isoforma protein.
Length = 635
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 116 QWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYD 175
+W++YRK++E R M+ ++ + E V +I P F+ ++ G +
Sbjct: 244 RWVQYRKDREIRRFMMNKQSNDMSVGQYVNDYEDEAYVGNITIGTPQQQFKVILDTGSSN 303
Query: 176 Y---DITKGPNPDYLCLI-KCRQEVCE 198
DIT G P+ + CR +C+
Sbjct: 304 LWIPDITCGTKPENCSTVPACRGIICQ 330
>AF047655-10|AAC04396.1| 335|Caenorhabditis elegans Hypothetical
protein C17B7.2 protein.
Length = 335
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 52 FGENYVNELSDKASDPLILEKCKD 75
F ENY EL +K ++ EKCKD
Sbjct: 265 FPENYEEELDEKKKKEMLQEKCKD 288
>Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical
protein DH11.2 protein.
Length = 411
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 10 QIEIAVARRSKDLPQIAPRLVA--VSKIKPVELIVEAYNAGQRHFG 53
++ + + S DLPQ+ ++ VSK+ P EL+ ++ R FG
Sbjct: 10 RLPVVRVQDSSDLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFG 55
>Z46794-6|CAA86776.1| 416|Caenorhabditis elegans Hypothetical
protein R06F6.6 protein.
Length = 416
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 9 SQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAG 48
+Q + A + +S+DLP IAP V+ +I V++ +E +G
Sbjct: 344 AQYDSADSSQSEDLPDIAPESVSSEEIIEVDVNIEGSGSG 383
>U97008-1|AAB52310.1| 370|Caenorhabditis elegans Hypothetical
protein C03G6.10 protein.
Length = 370
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 163 LDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDVEL 209
++FQG + +D+TK P YL CR C + ++ K +++
Sbjct: 41 INFQGKCDLNNQCFDLTKANEP-YLRCRACRYRKCLDVGMNQKAIQI 86
>Z70750-13|CAA94745.2| 679|Caenorhabditis elegans Hypothetical
protein C50F4.11 protein.
Length = 679
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 71 EKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVM 130
+K K + ++ KIN + + +E ++K ++ +Q + R++ ER++ M
Sbjct: 42 KKLKQATFRRHAPVEARKINFDMTLSPVAPIELASAKKEKESAQRQLVTLREDHERMKQM 101
Query: 131 VQVNTSGEQAKSGLEPLETTKAVEHILE 158
+Q N QAK + ++ E +LE
Sbjct: 102 MQTN----QAKLAEKTIDLETNREKMLE 125
>U80027-20|AAC48113.2| 400|Caenorhabditis elegans Hypothetical
protein T28A11.2a protein.
Length = 400
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 FGENYVNELSDKASDPLILEKCKD 75
F ENY EL +K ++ E CKD
Sbjct: 330 FLENYEEELDEKKKKQMLQENCKD 353
>AF239998-1|AAF63494.1| 679|Caenorhabditis elegans MDF-1 protein.
Length = 679
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 71 EKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVM 130
+K K + ++ KIN + + +E ++K ++ +Q + R++ ER++ M
Sbjct: 42 KKLKQATFRRHAPVEARKINFDMTLSPVAPIELASAKKEKESAQRQLVTLREDHERMKQM 101
Query: 131 VQVNTSGEQAKSGLEPLETTKAVEHILE 158
+Q N QAK + ++ E +LE
Sbjct: 102 MQTN----QAKLAEKTIDLETNREKMLE 125
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,687,165
Number of Sequences: 27539
Number of extensions: 233519
Number of successful extensions: 613
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 12
length of query: 229
length of database: 12,573,161
effective HSP length: 79
effective length of query: 150
effective length of database: 10,397,580
effective search space: 1559637000
effective search space used: 1559637000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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