GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002329-TA|BGIBMGA002329-PA|undefined
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    29   1.0  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    27   4.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   7.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   7.3  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   9.6  

>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 210 NGRTIKVKVQNQEIEIGNEFIV-PYCPLLSRIFETHANVE 248
           N  T + K+Q+ E  + NEF+  P  P LS++F    N E
Sbjct: 224 NSLTPQKKIQSSERSVENEFLASPMDPSLSKLFTKTTNTE 263


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 24  QNLSEERQNIIRENARLRQRVSTRRSLASYNRL 56
           +N SE ++N  R+NARLR  V T  +LAS  R+
Sbjct: 255 KNRSERQKNKARDNARLRNLVDT--ALASDPRI 285


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 31  QNIIRENARLRQRVSTRRSLASYN 54
           +N++  N++LR  + TR SLA +N
Sbjct: 642 KNLVASNSQLRGLIMTRNSLAQHN 665


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 254 KSIKYLCKYVTKGSDMAVFGIASENA-NDEISNFQMGRYVSTNEALWRLLSFQIHERYPT 312
           +S + L KY+ K +D   F +    A N EI++    +  +T      L+  +++   PT
Sbjct: 2   RSSQTLSKYIDKATDQ--FNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPT 59

Query: 313 VVHLAVHL 320
           V +LA+HL
Sbjct: 60  VSYLALHL 67


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 156 VTTQMVHGPCGALNPLSPCMADGKCTKRYPRPLVAET 192
           V+   V+G  GA N   PC+A       Y R ++ +T
Sbjct: 681 VSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKT 717


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,526
Number of Sequences: 5004
Number of extensions: 89082
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 5
length of query: 460
length of database: 2,362,478
effective HSP length: 75
effective length of query: 385
effective length of database: 1,987,178
effective search space: 765063530
effective search space used: 765063530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)